Assay Details
Target Gene Details
Entrez Gene ID: | 83989 |
Gene Name: | family with sequence similarity 172 member A |
Gene Aliases: |
C5orf21 |
Location: |
Chr.5:93615130-94111699 on Build GRCh38 |
Assay Gene Location: | Within Exon 21 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
FAM172A | NM_001163417.1 | 10 | 1409 | NP_001156889.1 |
NM_001163418.1 | 9 | 1217 | NP_001156890.1 | |
NM_032042.5 | 11 | 1533 | NP_114431.2 | |
NR_028080.1 | 9 | 1240 | ||
XM_005272105.3 | 10 | 1306 | XP_005272162.1 | |
XM_005272106.3 | 10 | 1280 | XP_005272163.1 | |
XM_005272108.3 | 10 | 1427 | XP_005272165.1 | |
XM_005272110.3 | 9 | 1134 | XP_005272167.1 | |
XM_006714717.3 | 11 | 1525 | XP_006714780.1 | |
XM_006714718.3 | 9 | 2139 | XP_006714781.1 | |
XM_006714719.3 | 9 | 1288 | XP_006714782.1 | |
XM_011543672.2 | 11 | 1429 | XP_011541974.1 | |
XM_011543673.2 | 10 | 1328 | XP_011541975.1 | |
XM_017009952.1 | 11 | 1821 | XP_016865441.1 | |
XM_017009953.1 | 11 | 1819 | XP_016865442.1 | |
XM_017009955.1 | 10 | 2237 | XP_016865444.1 | |
XM_017009956.1 | 10 | 1551 | XP_016865445.1 | |
XM_017009957.1 | 9 | 1505 | XP_016865446.1 | |
XM_017009958.1 | 9 | 1300 | XP_016865447.1 | |
XM_017009960.1 | 8 | 1082 | XP_016865449.1 | |
AK295879.1 | 9 | 1166 | ||
AK296683.1 | 5 | 718 | ||
AK296986.1 | ||||
AK297471.1 | ||||
AK309742.1 | 2 | 319 | ||
BC020584.2 | 10 | 1335 | AAH20584.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv954n67 | Chr.5:93560640 - 93633962 on Build GRCh38 | Gain | FAM172A MIR2277 NR2F1 NR2F1-AS1 |
nsv830404 | Chr.5:93532630 - 93712551 on Build GRCh38 | Loss | FAM172A MIR2277 NR2F1 NR2F1-AS1 |
More Information
Additional Information:
For this assay, SNP(s) [rs147889267] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |