Assay Details
Target Gene Details
Entrez Gene ID: | 64788 |
Gene Name: | lipase maturation factor 1 |
Gene Aliases: |
C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A |
Location: |
Chr.16:853632-981615 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 19 - Exon 20 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LMF1 | NM_022773.2 | NP_073610.2 | ||
NR_033645.1 | ||||
NR_033646.1 | ||||
XM_006720928.2 | XP_006720991.1 | |||
XM_006720929.3 | XP_006720992.1 | |||
XM_011522617.2 | XP_011520919.1 | |||
XM_017023575.1 | XP_016879064.1 | |||
XM_017023576.1 | XP_016879065.1 | |||
XM_017023577.1 | XP_016879066.1 | |||
XM_017023578.1 | XP_016879067.1 | |||
XM_017023579.1 | XP_016879068.1 | |||
XM_017023580.1 | XP_016879069.1 | |||
AB075873.1 | BAD38655.1 | |||
AK022743.1 | BAB14218.1 | |||
AK025955.1 | BAB15295.1 | |||
AK093050.1 | ||||
AK125201.1 | ||||
AK225065.1 | ||||
AK225406.1 | ||||
AL832177.1 | ||||
BC010738.1 | AAH10738.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv571046 | Chr.16:828324 - 1202441 on Build GRCh38 | Gain | LMF1-AS1 SSTR5 SSTR5-AS1 C1QTNF8 CACNA1H SOX8 LOC107984876 LMF1 |
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | ABCA17P LOC652276 RPUSD1 RPS2 CRAMP1 NME4 AMDHD2 NHLRC4 TSC2 BRICD5 LOC105371046 PDIA2 UNKL MIR1225 TPSAB1 MIR4516 TPSD1 STUB1 LOC101929280 SSTR5-AS1 MLST8 SNORA10 DECR2 HBM LOC105371045 LINC00254 TRAF7 WFIKKN1 ABCA3 MIR6768 LINC00235 MCRIP2 LOC106660606 TSR3 HAGHL SNORA64 CCNF SNORA78 HS3ST6 ATP6V0C LMF1 NDUFB10 TELO2 MIR3180-5 CCDC154 RAB40C PRR35 ARHGDIG MIR6859-4 PRR25 WASIR2 ERVK13-1 CHTF18 PIGQ LOC105371049 NTHL1 FBXL16 DDX11L10 UBE2I RPL23AP5 GNG13 GFER MIR3176 HN1L KCTD5 MIR4717 MEIOB TMEM8A MIR3177 RHBDL1 METRN AXIN1 LOC729652 MSLN LOC107987233 SNRNP25 RPL3L LOC105371184 C16orf59 C16orf91 HBA1 MIR3677 METTL26 DNASE1L2 FAM234A NTN3 PGP RGS11 SPSB3 RNPS1 LOC105371038 CCDC78 NPRL3 ZNF598 TPSG1 SNHG19 NOXO1 IFT140 LUC7L MIR662 NARFL GNPTG PTX4 HBZ FLJ42627 CLCN7 SNORD60 RAB11FIP3 CAPN15 LOC105371047 HBQ1 TPSB2 C1QTNF8 PKD1 MIR3178 MRPL28 LMF1-AS1 SSTR5 RNF151 MPG MIR6511B1 RAB26 CACNA1H HAGH LOC100287175 WDR90 TBL3 SLC9A3R2 FAHD1 NUBP2 PDPK1 RHOT2 MAPK8IP3 MSRB1 NME3 MIR6767 RHBDF1 POLR3K SOX8 E4F1 WDR24 ECI1 TBC1D24 PRSS27 NPW TMEM204 BAIAP3 FAM173A SNHG9 LOC100134368 EME2 MRPS34 HBA2 MIR940 PRSS29P IGFALS MIR5587 JMJD8 LOC107984876 CASKIN1 SYNGR3 CEMP1 |
esv3637586 | Chr.16:798995 - 892120 on Build GRCh38 | Loss | PRR25 GNG13 LMF1 |
esv3637595 | Chr.16:859147 - 890552 on Build GRCh38 | Loss | LMF1 |
nsv1046349 | Chr.16:819378 - 942590 on Build GRCh38 | Loss | LMF1-AS1 LOC107984876 LMF1 |
nsv952898 | Chr.16:495001 - 1132900 on Build GRCh38 | Deletion | LMF1-AS1 METTL26 SSTR5 RAB40C PRR35 RPUSD1 PRR25 LOC100287175 WDR90 NHLRC4 LOC105371038 CCDC78 RHOT2 CHTF18 PIGQ FBXL16 GNG13 SOX8 MIR3176 MIR662 NARFL WDR24 STUB1 LOC101929280 SSTR5-AS1 RHBDL1 METRN FAM173A MSLN WFIKKN1 LINC00235 LOC107987233 RAB11FIP3 MCRIP2 CAPN15 LOC105371184 HAGHL MIR5587 C1QTNF8 JMJD8 LOC107984876 LMF1 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |