Assay Details
Target Gene Details
Entrez Gene ID: | 64788 |
Gene Name: | lipase maturation factor 1 |
Gene Aliases: |
C16orf26, HMFN1876, JFP11, TMEM112, TMEM112A |
Location: |
Chr.16:853632-981615 on Build GRCh38 |
Assay Gene Location: | Within Exon 17 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LMF1 | NM_022773.2 | 8 | 1177 | NP_073610.2 |
NR_033645.1 | 9 | 1306 | ||
NR_033646.1 | 10 | 1484 | ||
XM_006720928.2 | 8 | 1450 | XP_006720991.1 | |
XM_006720929.3 | 9 | 1331 | XP_006720992.1 | |
XM_011522614.2 | 8 | 1175 | XP_011520916.1 | |
XM_011522617.2 | 6 | 826 | XP_011520919.1 | |
XM_017023575.1 | 8 | 1175 | XP_016879064.1 | |
XM_017023576.1 | 7 | 941 | XP_016879065.1 | |
XM_017023577.1 | 9 | 1606 | XP_016879066.1 | |
XM_017023578.1 | 7 | 1026 | XP_016879067.1 | |
XM_017023579.1 | 7 | 1034 | XP_016879068.1 | |
XM_017023580.1 | 10 | 1756 | XP_016879069.1 | |
AB075873.1 | 8 | 1161 | BAD38655.1 | |
AK022743.1 | 8 | 1175 | BAB14218.1 | |
AK025955.1 | 8 | 1109 | BAB15295.1 | |
AK093050.1 | 5 | 684 | ||
AK125201.1 | 9 | 1308 | ||
AK225065.1 | 8 | 1175 | ||
AK225406.1 | 8 | 1162 | ||
AL832177.1 | 2 | 2795 | ||
BC010738.1 | 7 | 942 | AAH10738.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv571046 | Chr.16:828324 - 1202441 on Build GRCh38 | Gain | SOX8 CACNA1H LOC107984876 C1QTNF8 LMF1 SSTR5-AS1 SSTR5 LMF1-AS1 |
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | NUBP2 LOC105371046 MLST8 TSC2 PRSS27 SPSB3 TPSB2 CLCN7 ATP6V0C RAB11FIP3 SNORA64 MPG SNORA10 DNASE1L2 PTX4 LOC105371047 MIR6767 RHOT2 NTN3 NTHL1 NHLRC4 ZNF598 PRR25 LUC7L C16orf91 FBXL16 LMF1-AS1 CCDC154 CRAMP1 SNORA78 WFIKKN1 SSTR5 PKD1 STUB1 LOC100287175 MIR3177 CEMP1 SNHG19 SNHG9 NME4 DECR2 LOC105371049 CCDC78 CACNA1H RHBDL1 SSTR5-AS1 IGFALS RPL23AP5 MEIOB TPSD1 ERVK13-1 RPUSD1 TMEM8A GNPTG RHBDF1 MIR1225 SNORD60 TPSG1 ABCA17P LINC00254 MRPL28 LOC105371045 NME3 WDR24 LINC00235 GFER TMEM204 ABCA3 SNRNP25 MIR4516 METTL26 KCTD5 NOXO1 CASKIN1 MRPS34 RNPS1 MIR6768 LOC100134368 PRSS29P GNG13 FAHD1 SLC9A3R2 LMF1 ECI1 PDIA2 NDUFB10 MIR3677 FLJ42627 RPS2 CAPN15 MIR662 RAB26 MIR3176 MIR6511B1 LOC107987233 POLR3K PDPK1 HAGHL HAGH CCNF MIR5587 LOC729652 METRN MSRB1 TPSAB1 HBZ SOX8 RAB40C HBQ1 HS3ST6 EME2 JMJD8 FAM173A WASIR2 LOC652276 LOC105371184 BRICD5 RNF151 TELO2 LOC107984876 HBA1 AXIN1 TSR3 WDR90 MAPK8IP3 HBM LOC105371038 MIR3178 CHTF18 IFT140 PGP UNKL DDX11L10 MSLN UBE2I LOC106660606 MCRIP2 MIR6859-4 E4F1 HBA2 PRR35 MIR4717 HN1L MIR3180-5 FAM234A TRAF7 LOC101929280 TBL3 PIGQ NPW RGS11 AMDHD2 SYNGR3 ARHGDIG TBC1D24 C1QTNF8 BAIAP3 MIR940 NARFL RPL3L NPRL3 C16orf59 |
esv3637586 | Chr.16:798995 - 892120 on Build GRCh38 | Loss | GNG13 LMF1 PRR25 |
esv3637595 | Chr.16:859147 - 890552 on Build GRCh38 | Loss | LMF1 |
nsv1046349 | Chr.16:819378 - 942590 on Build GRCh38 | Loss | LOC107984876 LMF1 LMF1-AS1 |
nsv952898 | Chr.16:495001 - 1132900 on Build GRCh38 | Deletion | CCDC78 CAPN15 MIR662 RHBDL1 LOC105371038 MIR3176 LOC107987233 SSTR5-AS1 CHTF18 RAB11FIP3 RPUSD1 MSLN MCRIP2 HAGHL MIR5587 PRR35 RHOT2 NHLRC4 WDR24 LINC00235 PRR25 METRN FBXL16 LMF1-AS1 SOX8 RAB40C METTL26 LOC101929280 JMJD8 WFIKKN1 PIGQ SSTR5 STUB1 LOC100287175 FAM173A LOC105371184 LOC107984876 C1QTNF8 GNG13 NARFL LMF1 WDR90 |
More Information
Set Membership: |
Intragenic Exonic DGV Variation |