Assay Details
Target Gene Details
Entrez Gene ID: | 10555 |
Gene Name: | 1-acylglycerol-3-phosphate O-acyltransferase 2 |
Gene Aliases: |
1-AGPAT2, BSCL, BSCL1, LPAAB, LPAAT-beta |
Location: |
Chr.9:136673143-136687459 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 3 - Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
AGPAT2 | NM_001012727.1 | NP_001012745.1 | ||
NM_006412.3 | NP_006403.2 | |||
AF000237.1 | AAC51649.1 | |||
AF011374.1 | AAB64299.1 | |||
BC000026.2 | AAH00026.1 | |||
BC004529.2 | AAH04529.1 | |||
BC007269.1 | AAH07269.1 | |||
BC019292.1 | AAH19292.1 | |||
BF347518.1 | ||||
CN407343.1 | ||||
U56418.2 | AAB58776.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv13005n54 | Chr.9:136605258 - 136696482 on Build GRCh38 | Loss | LINC01451 EGFL7 HSPC324 AGPAT2 MIR126 |
nsv509334 | Chr.9:136514168 - 136724663 on Build GRCh38 | Insertion | MIR4674 LINC01451 EGFL7 HSPC324 NALT1 AGPAT2 NOTCH1 MIR4673 FAM69B SNHG7 MIR126 |
nsv951203 | Chr.9:136562849 - 136770848 on Build GRCh38 | Deletion | LCN6 MIR6722 LINC01451 EGFL7 HSPC324 AGPAT2 LCN15 SNHG7 MIR126 LOC100128593 LCN10 SNORA17B FAM69B LCN8 SNORA17A |
nsv469918 | Chr.9:136359865 - 137173890 on Build GRCh38 | Loss | PTGDS CARD9 ABCA2 SNAPC4 HSPC324 MIR4292 PMPCA MIR4479 MIR4674 C9orf142 ENTPD2 TRAF2 SNORA17B UAP1L1 LCN6 LCNL1 MIR6722 DNLZ NALT1 C9orf139 CCDC183 PRR31 LCN15 FUT7 C8G MIR3621 LCN10 DPP7 EDF1 MIR4673 FAM69B FBXW5 LCN12 TMEM210 C9orf163 RABL6 LRRC26 MAN1B1 SAPCD2 SEC16A LCN8 NPDC1 GRIN1 TMEM141 LINC01451 EGFL7 SDCCAG3 CCDC183-AS1 MAN1B1-AS1 AGPAT2 C9orf172 NOTCH1 SNHG7 MIR126 PHPT1 LOC100128593 CLIC3 LOC101930307 MAMDC4 INPP5E SNORA17A |
esv2759720 | Chr.9:136356377 - 136932033 on Build GRCh38 | Loss | CARD9 SNAPC4 HSPC324 MIR4292 PMPCA MIR4479 C9orf163 MIR4674 RABL6 SEC16A TRAF2 SNORA17B LCN8 GPSM1 LCN6 MIR6722 TMEM141 LINC01451 EGFL7 SDCCAG3 CCDC183-AS1 DNLZ NALT1 AGPAT2 C9orf172 NOTCH1 CCDC183 LCN15 SNHG7 MIR126 PHPT1 LOC100128593 LCN10 MAMDC4 EDF1 MIR4673 FAM69B INPP5E SNORA17A |
nsv8579 | Chr.9:136505432 - 136760256 on Build GRCh38 | Gain | LCN6 MIR6722 LINC01451 EGFL7 HSPC324 NALT1 AGPAT2 NOTCH1 LCN15 SNHG7 MIR126 MIR4674 LOC100128593 LCN10 SNORA17B MIR4673 FAM69B LCN8 SNORA17A |
nsv1053781 | Chr.9:136590694 - 136722927 on Build GRCh38 | Gain | LINC01451 EGFL7 HSPC324 AGPAT2 FAM69B MIR126 |
dgv957n27 | Chr.9:136619086 - 136725859 on Build GRCh38 | Loss | EGFL7 HSPC324 AGPAT2 FAM69B SNHG7 MIR126 |
esv2422220 | Chr.9:136584135 - 137350098 on Build GRCh38 | Deletion | PTGDS ABCA2 HSPC324 MIR4292 ANAPC2 MIR4479 TMEM203 C9orf142 ENTPD2 TRAF2 SNORA17B UAP1L1 C9orf173-AS1 LCN6 LCNL1 MIR6722 C9orf139 NELFB CCDC183 PRR31 LCN15 FUT7 C8G MIR3621 LCN10 STPG3 DPP7 EDF1 FAM69B FBXW5 SSNA1 CYSRT1 NRARP LCN12 TMEM210 TOR4A RNF208 RNF224 RABL6 LRRC26 MAN1B1 SAPCD2 LCN8 NPDC1 GRIN1 TUBB4B TMEM141 LINC01451 EGFL7 CCDC183-AS1 SLC34A3 FAM166A MAN1B1-AS1 AGPAT2 C9orf172 NDOR1 EXD3 SNHG7 MIR126 PHPT1 LOC100128593 CLIC3 LOC101930307 MAMDC4 TPRN SNORA17A |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |