Assay Details
Target Gene Details
Entrez Gene ID: | 1201 |
Gene Name: | CLN3, battenin |
Gene Aliases: |
BTS, JNCL |
Location: |
Chr.16:28466653-28492302 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CLN3 | NM_000086.2 | NP_000077.1 | ||
NM_001042432.1 | NP_001035897.1 | |||
NM_001286104.1 | NP_001273033.1 | |||
NM_001286105.1 | NP_001273034.1 | |||
NM_001286109.1 | NP_001273038.1 | |||
NM_001286110.1 | NP_001273039.1 | |||
AK090709.1 | ||||
AK294250.1 | ||||
AK295500.1 | ||||
AK297690.1 | ||||
AK302027.1 | ||||
AK302138.1 | ||||
AK313002.1 | ||||
AU105965.1 | ||||
BC002394.2 | AAH02394.1 | |||
BC004433.1 | AAH04433.1 | |||
BP252176.1 | ||||
DA552461.1 | ||||
DA703317.1 | ||||
DA869025.1 | ||||
DB101039.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv509608 | Chr.16:28449797 - 28632895 on Build GRCh38 | Insertion | APOBR SGF29 NUPR1 SULT1A1 CLN3 IL27 SULT1A2 |
esv2758640 | Chr.16:28163817 - 29139232 on Build GRCh38 | Gain+Loss | MIR6862-2 MIR6862-1 MIR4517 LAT NPIP SH2B1 SULT1A2 EIF3CL NPIPB9 APOBR SPNS1 NPIPB8 SGF29 RABEP2 CD19 SULT1A1 IL27 NPIPB6 ATP2A1-AS1 RRN3P2 SBK1 ATP2A1 NFATC2IP MIR4721 ATXN2L EIF3C TUFM NUPR1 CLN3 LOC101928215 XPO6 |
nsv1059555 | Chr.16:28373144 - 29195838 on Build GRCh38 | Gain | MIR6862-2 MIR6862-1 MIR4517 LAT NPIP SH2B1 SULT1A2 EIF3CL NPIPB9 APOBR SPNS1 NPIPB8 SGF29 RABEP2 CD19 SULT1A1 IL27 ATP2A1-AS1 RRN3P2 ATP2A1 NFATC2IP MIR4721 ATXN2L LOC107984832 EIF3C TUFM NUPR1 CLN3 LOC101928215 |
nsv833180 | Chr.16:28346157 - 28574165 on Build GRCh38 | Loss | EIF3CL APOBR MIR6862-1 SGF29 NUPR1 CLN3 IL27 NPIPB6 |
nsv9415 | Chr.16:28468881 - 28498959 on Build GRCh38 | Gain | APOBR CLN3 |
More Information
Additional Information:
For this assay, SNP(s) [rs73533476] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic DGV Variation |