Assay Details
Target Gene Details
Entrez Gene ID: | 84690 |
Gene Name: | spermatogenesis associated 22 |
Gene Aliases: |
NYD-SP20, NYDSP20 |
Location: |
Chr.17:3440011-3513852 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPATA22 | NM_001321336.1 | NP_001308265.1 | ||
NM_001321337.1 | NP_001308266.1 | |||
AK295299.1 |
Target Gene Details
Entrez Gene ID: | 162514 |
Gene Name: | transient receptor potential cation channel subfamily V member 3 |
Gene Aliases: |
FNEPPK2, OLMS, VRL3 |
Location: |
Chr.17:3510502-3557995 on Build GRCh38 |
Assay Gene Location: | Within Exon 18 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TRPV3 | NM_001258205.1 | 18 | 4482 | NP_001245134.1 |
NM_145068.3 | 18 | 4479 | NP_659505.1 | |
AK127330.1 | 6 | 2478 | ||
AK127726.1 | 12 | 3431 | ||
BX537539.1 | 12 | 3419 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3892950 | Chr.17:3131812 - 3577153 on Build GRCh38 | Loss | OR1A1 OR3A3 OR1E2 SPATA22 TRPV1 OR3A4P OR3A2 ASPA OR1A2 OR1D4 OR1E1 TRPV3 OR3A1 |
nsv574237 | Chr.17:3486822 - 3729542 on Build GRCh38 | Loss | P2RX5 CTNS ITGAE P2RX5-TAX1BP3 TAX1BP3 GSG2 SHPK SPATA22 TRPV1 TRPV3 EMC6 ASPA |
nsv1065489 | Chr.17:2631416 - 3948349 on Build GRCh38 | Gain | OR1G1 OR1A1 CAMKK1 ATP2A3 MIR1253 NCBP3 GSG2 OR1E2 SPATA22 TRPV1 OR3A4P OR1D5 ASPA CTNS ITGAE P2RX5-TAX1BP3 SHPK OR1E1 EMC6 LOC105371591 P2RX5 TAX1BP3 OR3A3 PAFAH1B1 P2RX1 CLUH OR3A2 OR1D2 OR1A2 OR1D4 LOC101927911 MIR6776 RAP1GAP2 CCDC92B TRPV3 OR3A1 LOC105371592 |
esv23898 | Chr.17:3511464 - 3512895 on Build GRCh38 | Gain | SPATA22 TRPV3 |
esv2660206 | Chr.17:2679367 - 3519614 on Build GRCh38 | Deletion | LOC105371591 OR1G1 OR1A1 MIR1253 OR3A3 PAFAH1B1 OR1E2 SPATA22 OR3A4P CLUH OR1D5 OR3A2 OR1D2 ASPA OR1A2 OR1D4 LOC101927911 OR1E1 MIR6776 RAP1GAP2 CCDC92B TRPV3 OR3A1 LOC105371592 |
nsv1055740 | Chr.17:3381841 - 3890153 on Build GRCh38 | Gain | P2RX5 CAMKK1 NCBP3 TAX1BP3 OR3A3 GSG2 OR1E2 SPATA22 TRPV1 OR3A2 ASPA CTNS ITGAE P2RX5-TAX1BP3 SHPK OR1E1 TRPV3 EMC6 |
nsv833341 | Chr.17:3352243 - 3521390 on Build GRCh38 | Loss | OR3A3 OR1E1 OR1E2 SPATA22 TRPV3 OR3A2 ASPA |
nsv1060071 | Chr.17:3398474 - 3633472 on Build GRCh38 | Loss | OR3A3 SHPK OR1E2 SPATA22 TRPV1 TRPV3 ASPA |
More Information
Additional Information:
For this assay, SNP(s) [rs76456640] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |