Assay Details
Target Gene Details
Entrez Gene ID: | 100132911 |
Gene Name: | diphthamide biosynthesis 3 pseudogene 1 |
Gene Aliases: |
C20orf143, DPH3B, ZCSL1 |
Location: |
Chr.20:62844566-62846191 on Build GRCh38 |
Assay Gene Location: | Within Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
DPH3P1 | NM_080750.4 | 1 | 921 | NP_542788.1 |
Target Gene Details
Entrez Gene ID: | 10732 |
Gene Name: | transcription factor like 5 |
Gene Aliases: |
CHA, E2BP-1, Figlb, bHLHe82 |
Location: |
Chr.20:62841014-62861763 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TCFL5 | NM_006602.3 | NP_006593.2 | ||
XM_005260185.3 | XP_005260242.1 | |||
AB012124.1 | BAA36557.1 | |||
AF070992.1 | AAD53986.1 | |||
AJ271337.1 | CAC24700.1 | |||
BC046933.1 | 6 | 2106 | AAH46933.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv834027 | Chr.20:62707655 - 62874914 on Build GRCh38 | Loss | COL9A3 MRGBP DPH3P1 NTSR1 OGFR-AS1 LOC107985428 LINC00659 TCFL5 OGFR LOC107987285 |
nsv828794 | Chr.20:62832958 - 62880035 on Build GRCh38 | Loss | COL9A3 DPH3P1 TCFL5 DIDO1 |
nsv9825 | Chr.20:62775470 - 63601330 on Build GRCh38 | Gain | MIR3196 FNDC11 COL9A3 HAR1B ARFGAP1 OGFR-AS1 LINC00029 BHLHE23 OGFR LOC100130152 PTK6 SRMS CHRNA4 LOC102723788 COL20A1 KCNQ2 HAR1A LOC107985428 BIRC7 LOC107985425 FLJ16779 MIR4326 LOC100130587 MRGBP DPH3P1 LOC63930 SLC17A9 YTHDF1 GMEB2 TCFL5 DIDO1 MIR124-3 LINC01056 HELZ2 LINC00659 EEF1A2 GID8 NKAIN4 PPDPF |
nsv428380 | Chr.20:62632018 - 62935383 on Build GRCh38 | Loss | COL9A3 MRGBP DPH3P1 NTSR1 OGFR-AS1 TCFL5 SLCO4A1-AS1 DIDO1 OGFR LOC107985428 LINC00659 SLCO4A1 LOC107987285 |
More Information
Additional Information:
For this assay, SNP(s) [rs77794068] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Exonic Intronic Non-exonic DGV Variation |