Hs07124344_cn

• Gene Symbol: TFPT
• Assay Reference Genome Location: Chr.19:54107715 on build GRCh38
• Cytoband: 19q13.42

Target Gene Details

• Entrez Gene ID: 29844
• Gene Name: TCF3 fusion partner
• Gene Aliases: FB1, INO80F, amida
• Location: Chr.19:54107013-54115675 on Build GRCh38
• Assay Gene Location: Within Intron 6

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TFPT	NM_001321792.1			NP_001308721.1
	NM_013342.3			NP_037474.1
	XM_005278261.1			XP_005278318.1
	AF052052.1			AAD45182.1
	BC004281.1			AAH04281.1
	BC007776.2			AAH07776.1
	BQ027375.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1056177	Chr.19:54073048 - 54112306 on Build GRCh38	Gain	TFPT OSCAR NDUFA3 TARM1
nsv510773	Chr.19:54017180 - 54132236 on Build GRCh38	Deletion	TFPT OSCAR NDUFA3 PRPF31 TARM1 VSTM1
nsv515623	Chr.19:54102901 - 54179150 on Build GRCh38	Loss	LENG1 TFPT NDUFA3 MBOAT7 PRPF31 CNOT3 TMC4
nsv953613	Chr.19:54097214 - 54198733 on Build GRCh38	Deletion	LENG1 TFPT OSCAR NDUFA3 MBOAT7 PRPF31 CNOT3 TMC4 TSEN34
esv2718812	Chr.19:53184636 - 54322450 on Build GRCh38	Deletion	MIR522 MIR1283-1 DPRX MIR935 MIR516A2 MIR517C MIR520G MIR371A VSTM1 MIR521-1 MIR516B1 MIR373 TSEN34 MIR516B2 LENG1 MIR518D PRPF31 CACNG6 PRKCG MIR518A1 MIR371B MIR516A1 LILRB5 VN1R2 MIR518F MIR520F LOC105372457 FAM90A27P LOC284379 MIR518B ZNF765 CNOT3 MIR519A2 ZNF813 MIR498 RPS9 MIR520B MIR1283-2 NDUFA3 ZNF818P MIR1323 TMC4 MIR512-2 MIR519E MIR512-1 MIR518E ZNF525 MYADM MIR519B CACNG7 TARM1 MIR520H MIR519A1 MIR372 MIR523 MIR4752 MIR518A2 MIR525 ZNF665 MIR517A VN1R4 CACNG8 MIR520C MIR526A2 NLRP12 MBOAT7 MIR520A MIR515-1 MIR521-2 MIR519D LILRB3 MIR527 MIR518C BIRC8 MIR517B ZNF845 MIR520E ZNF677 MIR520D ZNF761 TPM3P9 TFPT OSCAR ZNF331 MIR526A1 MIR515-2 LILRA5 LILRA6 LILRB2 MIR524 MIR526B MIR519C
nsv470157	Chr.19:54063999 - 54127773 on Build GRCh38	Loss	TFPT OSCAR NDUFA3 PRPF31 TARM1
esv3893246	Chr.19:54081109 - 54111207 on Build GRCh38	Gain	TFPT OSCAR NDUFA3 TARM1
nsv833877	Chr.19:53951529 - 54117323 on Build GRCh38	Loss	TFPT OSCAR NDUFA3 PRPF31 MIR935 CACNG6 TARM1 VSTM1 CACNG8

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

DNA repair
DNA recombination
transcription, DNA-templated
regulation of transcription, DNA-templated
male gonad development
positive regulation of apoptotic process
apoptotic signaling pathway

Function(s)

DNA binding
protein binding
protein heterodimerization activity