Hs06825400_cn

• Gene Symbol: SECISBP2
• Assay Reference Genome Location: Chr.9:89336576 on build GRCh38
• Cytoband: 9q22.2

Target Gene Details

• Entrez Gene ID: 79048
• Gene Name: SECIS binding protein 2
• Gene Aliases: SBP2
• Location: Chr.9:89318473-89367117 on Build GRCh38
• Assay Gene Location: Within Intron 9

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
SECISBP2	NM_001282688.1			NP_001269617.1
	NM_001282689.1			NP_001269618.1
	NM_001282690.1			NP_001269619.1
	NM_024077.4			NP_076982.3
	XM_005252196.2			XP_005252253.1
	XM_005252202.3			XP_005252259.1
	XM_006717282.2			XP_006717345.1
	XM_011519000.2			XP_011517302.1
	XM_011519001.1			XP_011517303.1
	XM_011519002.1			XP_011517304.1
	XM_011519003.1			XP_011517305.1
	XM_017015122.1			XP_016870611.1
	XM_017015123.1			XP_016870612.1
	XM_017015124.1			XP_016870613.1
	XM_017015125.1			XP_016870614.1
	AB208940.1			BAD92177.1
	AF380995.1			AAK57518.1
	AK090608.1
	AK290182.1
	AK299161.1
	AK302852.1
	AL136881.1			CAB66815.1
	BC001189.1			AAH01189.1
	BC023142.1			AAH23142.2
	BC036109.1			AAH36109.1
	BC099900.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv3621014	Chr.9:88877891 - 89641453 on Build GRCh38	Gain	SEMA4D GADD45G C9orf47 SECISBP2 S1PR3 UNQ6494 CKS2 SHC3 MIR3153
nsv1041327	Chr.9:89298100 - 89438209 on Build GRCh38	Gain	SEMA4D SECISBP2 CKS2 MIR3153

More Information

Additional Information:

For this assay, SNP(s) [rs75953144] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

selenocysteine incorporation
striatum development
neuron development
negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay

Function(s)

mRNA 3'-UTR binding
protein binding
selenocysteine insertion sequence binding
ribonucleoprotein complex binding
poly(A) RNA binding