Assay Details
Target Gene Details
Entrez Gene ID: | 79888 |
Gene Name: | lysophosphatidylcholine acyltransferase 1 |
Gene Aliases: |
AGPAT10, AGPAT9, AYTL2, PFAAP3, lpcat |
Location: |
Chr.5:1461427-1523961 on Build GRCh38 |
Assay Gene Location: | Within Intron 16 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LPCAT1 | NM_024830.3 | NP_079106.3 | ||
XM_005248373.3 | XP_005248430.1 | |||
XM_011514132.1 | XP_011512434.1 | |||
XM_011514134.1 | XP_011512436.1 | |||
XM_017009879.1 | XP_016865368.1 | |||
AB244719.2 | ||||
AF530061.1 | AAQ09945.1 | |||
AK022499.1 | BAB14061.1 | |||
AK022505.1 | BAB14065.1 | |||
AK090444.1 | BAC03425.1 | |||
AK095552.1 | ||||
BC020166.1 | AAH20166.3 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv461910 | Chr.5:1423790 - 1468172 on Build GRCh38 | Loss | LPCAT1 SLC6A3 |
nsv830187 | Chr.5:1317991 - 1509711 on Build GRCh38 | Loss | LINC01511 LPCAT1 CLPTM1L SLC6A3 |
nsv596629 | Chr.5:457146 - 1468172 on Build GRCh38 | Gain | CLPTM1L MIR4457 TRIP13 LOC100506688 ZDHHC11 TERT LOC100996325 LINC01511 SLC12A7 LPCAT1 CEP72 EXOC3 SLC9A3 SLC6A19 BRD9 SLC6A3 MIR4635 LOC100288152 NKD2 LOC101929895 PP7080 MIR4456 TPPP SLC6A18 CTD-3080P12.3 ZDHHC11B |
dgv9536n54 | Chr.5:1411297 - 1468172 on Build GRCh38 | Loss | LPCAT1 SLC6A3 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |