Assay Details
Target Gene Details
Entrez Gene ID: | 26168 |
Gene Name: | SUMO1/sentrin/SMT3 specific peptidase 3 |
Gene Aliases: |
SMT3IP1, SSP3, Ulp1 |
Location: |
Chr.17:7561992-7571969 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3 | NM_015670.5 | NP_056485.2 | ||
AF199459.1 | AAL25652.1 | |||
AL050283.1 | CAB43384.2 | |||
AL834294.1 | CAD38967.1 | |||
AY008763.1 | AAG33252.1 | |||
BC048306.1 | AAH48306.1 | |||
BC080658.1 | AAH80658.1 |
Target Gene Details
Entrez Gene ID: | 100533955 |
Gene Name: | SENP3-EIF4A1 readthrough (NMD candidate) |
Gene Aliases: |
- |
Location: |
Chr.17:7561992-7579006 on Build GRCh38 |
Assay Gene Location: | Within Intron 7 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SENP3-EIF4A1 | NR_037926.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422288 | Chr.17:6789933 - 7646709 on Build GRCh38 | Deletion | ALOX12P2 GABARAP SAT2 ASGR1 ASGR2 BCL6B NLGN2 FGF11 PHF23 PLSCR3 ELP5 KCTD11 SHBG TNK1 CLDN7 TEKT1 MPDU1 TNFSF13 SNORA48 SLC2A4 ACAP1 SLC35G6 MIR324 C17orf74 TMEM256-PLSCR3 C17orf49 SLC16A11 TMEM95 SNORD10 CLEC10A SPEM1 DVL2 SOX15 RNASEK CHRNB1 ZBTB4 SENP3 LOC100996842 MIR497 ALOX12-AS1 MIR497HG RNASEK-C17orf49 SLC16A13 SNORA67 TNFSF12-TNFSF13 FXR2 LOC107983988 TMEM256 TNFSF12 SENP3-EIF4A1 POLR2A EIF5A MIR195 CD68 EIF4A1 YBX2 GPS2 ACADVL TMEM102 CTDNEP1 FBXO39 NEURL4 ATP1B2 DLG4 ALOX12 |
nsv574322 | Chr.17:7010333 - 7689462 on Build GRCh38 | Loss | GABARAP SAT2 ASGR1 ASGR2 BCL6B TP53 NLGN2 FGF11 PHF23 PLSCR3 ELP5 KCTD11 SHBG TNK1 CLDN7 MPDU1 TNFSF13 SNORA48 SLC2A4 ACAP1 SLC35G6 MIR324 C17orf74 TMEM256-PLSCR3 C17orf49 SLC16A11 TMEM95 SNORD10 CLEC10A SPEM1 DVL2 SOX15 RNASEK CHRNB1 ZBTB4 SENP3 LOC100996842 MIR497 ALOX12-AS1 MIR497HG RNASEK-C17orf49 SLC16A13 SNORA67 TNFSF12-TNFSF13 FXR2 LOC107983988 TMEM256 TNFSF12 SENP3-EIF4A1 POLR2A WRAP53 EIF5A MIR195 CD68 EIF4A1 YBX2 GPS2 ACADVL TMEM102 CTDNEP1 NEURL4 ATP1B2 DLG4 ALOX12 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |