Assay Details
Target Gene Details
Entrez Gene ID: | 55687 |
Gene Name: | tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase |
Gene Aliases: |
LCAL3, MTO2, MTU1, TRMT, TRMT1, TRNT1 |
Location: |
Chr.22:46335401-46357340 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv829293 | Chr.22:46241054 - 46741639 on Build GRCh38 | Gain | CERK PKDREJ TRMU TTC38 CDPF1 PPARA GTSE1-AS1 GTSE1 GRAMD4 CELSR1 |
nsv829281 | Chr.22:45861485 - 46735858 on Build GRCh38 | Gain | PKDREJ MIRLET7BHG TRMU TTC38 PPARA GRAMD4 WNT7B PRR34-AS1 PRR34 LINC00899 LOC730668 CERK CDPF1 GTSE1-AS1 MIRLET7A3 LOC107985535 MIR4763 MIR3619 GTSE1 CELSR1 LOC642648 MIRLET7B |
nsv834225 | Chr.22:46323584 - 46510799 on Build GRCh38 | Loss | TRMU GTSE1 CELSR1 |
nsv1066139 | Chr.22:46310352 - 46352592 on Build GRCh38 | Gain | TRMU GTSE1 |
nsv471214 | Chr.22:46278315 - 46367774 on Build GRCh38 | Loss | TRMU TTC38 GTSE1-AS1 GTSE1 CELSR1 |
esv3647951 | Chr.22:46324981 - 46344914 on Build GRCh38 | Loss | TRMU GTSE1 |
More Information
Additional Information:
For this assay, SNP(s) [rs116154799] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |