Assay Details
Target Gene Details
Entrez Gene ID: | 1013 |
Gene Name: | cadherin 15 |
Gene Aliases: |
CDH14, CDH3, CDHM, MCAD, MRD3 |
Location: |
Chr.16:89171755-89195492 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CDH15 | NM_004933.2 | NP_004924.1 | ||
AK308596.1 | ||||
AK308631.1 | ||||
BC008951.2 | AAH08951.1 | |||
D83542.1 | BAA12012.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv509638 | Chr.16:89152681 - 89296203 on Build GRCh38 | Insertion | SLC22A31 ZNF778 LINC00304 CDH15 ACSF3 LOC400558 ANKRD11 LOC105371414 |
nsv952072 | Chr.16:89032193 - 89201992 on Build GRCh38 | Deletion | SLC22A31 LINC00304 CDH15 ACSF3 LOC400558 |
nsv573727 | Chr.16:89169527 - 89193067 on Build GRCh38 | Loss | CDH15 |
nsv1063024 | Chr.16:88707330 - 89238482 on Build GRCh38 | Gain | SLC22A31 LOC107987238 LINC00304 CTU2 CDT1 TRAPPC2L LOC400558 LOC101927793 PABPN1L LOC100289580 CBFA2T3 ZNF778 PIEZO1 MIR4722 CDH15 ACSF3 GALNS APRT LOC339059 LOC105371409 LOC100129697 |
nsv471115 | Chr.16:88801844 - 89197442 on Build GRCh38 | Loss | SLC22A31 LOC107987238 LINC00304 CDT1 TRAPPC2L LOC400558 LOC101927793 PABPN1L CBFA2T3 CDH15 ACSF3 GALNS APRT LOC105371409 LOC100129697 |
nsv573720 | Chr.16:88968841 - 89184474 on Build GRCh38 | Gain | CBFA2T3 LINC00304 CDH15 ACSF3 LOC400558 |
nsv573724 | Chr.16:89100686 - 89217401 on Build GRCh38 | Loss | SLC22A31 ZNF778 LINC00304 CDH15 ACSF3 LOC400558 |
nsv573674 | Chr.16:88738775 - 89325907 on Build GRCh38 | Gain | SLC22A31 LOC107987238 LINC00304 CDT1 TRAPPC2L LOC400558 LOC101927793 PABPN1L LOC100289580 CBFA2T3 LOC100287036 ZNF778 PIEZO1 CDH15 ACSF3 GALNS APRT LOC339059 ANKRD11 LOC105371409 LOC105371414 LOC100129697 |
dgv3066n100 | Chr.16:89067685 - 89301626 on Build GRCh38 | Gain | SLC22A31 ZNF778 LINC00304 CDH15 ACSF3 LOC400558 ANKRD11 LOC105371414 |
nsv482951 | Chr.16:88633593 - 90228345 on Build GRCh38 | Loss | CDK10 LOC101927817 MC1R CTU2 CPNE7 TUBB8P7 DEF8 CENPBD1 SNAI3-AS1 IL17C SPG7 CDH15 SNORD68 GALNS LOC105371419 CHMP1A LOC100129697 FANCA DPEP1 LOC101927793 LOC100289580 FAM157C MVD CYBA MIR4722 SPATA2L VPS9D1 PRDM7 GAS8 AFG3L1P URAHP LOC105371414 DBNDD1 SLC22A31 RPL13 LINC00304 CDT1 LOC400558 PABPN1L TUBB3 LOC100287036 ZNF778 SNAI3 TCF25 ACSF3 SPIRE2 ANKRD11 LOC107984817 LOC105371409 SPATA33 LOC107987238 RNF166 TRAPPC2L CBFA2T3 PIEZO1 VPS9D1-AS1 ZNF276 APRT LOC339059 GAS8-AS1 |
dgv5320n54 | Chr.16:89114475 - 89197443 on Build GRCh38 | Loss | SLC22A31 LINC00304 CDH15 ACSF3 LOC400558 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |