Hs05397418_cn

• Gene Symbol: CDH15
• Assay Reference Genome Location: Chr.16:89171880 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 1013
• Gene Name: cadherin 15
• Gene Aliases: CDH14, CDH3, CDHM, MCAD, MRD3
• Location: Chr.16:89171755-89195492 on Build GRCh38
• Assay Gene Location: Overlaps Exon 1 - Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
CDH15	NM_004933.2			NP_004924.1
	AK308596.1
	AK308631.1
	BC008951.2			AAH08951.1
	D83542.1			BAA12012.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv952072	Chr.16:89032193 - 89201992 on Build GRCh38	Deletion	ACSF3 LINC00304 SLC22A31 CDH15 LOC400558
nsv1063024	Chr.16:88707330 - 89238482 on Build GRCh38	Gain	LOC101927793 ACSF3 LINC00304 APRT CBFA2T3 PIEZO1 LOC107987238 LOC100129697 MIR4722 ZNF778 CTU2 LOC105371409 SLC22A31 PABPN1L CDT1 CDH15 LOC100289580 LOC400558 LOC339059 TRAPPC2L GALNS
nsv573723	Chr.16:89091139 - 89174375 on Build GRCh38	Gain	ACSF3 LINC00304 CDH15 LOC400558
nsv471115	Chr.16:88801844 - 89197442 on Build GRCh38	Loss	LOC101927793 ACSF3 LINC00304 APRT CBFA2T3 LOC107987238 LOC100129697 LOC105371409 SLC22A31 PABPN1L CDT1 CDH15 LOC400558 TRAPPC2L GALNS
nsv573720	Chr.16:88968841 - 89184474 on Build GRCh38	Gain	ACSF3 LINC00304 CDH15 LOC400558 CBFA2T3
nsv573724	Chr.16:89100686 - 89217401 on Build GRCh38	Loss	ACSF3 ZNF778 LINC00304 SLC22A31 CDH15 LOC400558
nsv573674	Chr.16:88738775 - 89325907 on Build GRCh38	Gain	LOC101927793 ACSF3 LINC00304 APRT LOC105371414 ANKRD11 LOC100287036 CBFA2T3 PIEZO1 LOC107987238 LOC100129697 ZNF778 LOC105371409 SLC22A31 PABPN1L CDT1 CDH15 LOC100289580 LOC400558 LOC339059 TRAPPC2L GALNS
dgv3066n100	Chr.16:89067685 - 89301626 on Build GRCh38	Gain	ACSF3 ZNF778 LINC00304 SLC22A31 CDH15 LOC400558 LOC105371414 ANKRD11
nsv521217	Chr.16:88805821 - 89174375 on Build GRCh38	Loss	LOC101927793 ACSF3 LINC00304 APRT CBFA2T3 LOC107987238 LOC100129697 LOC105371409 PABPN1L CDT1 CDH15 LOC400558 TRAPPC2L GALNS
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC101927793 ZNF276 SNAI3-AS1 APRT CYBA IL17C TUBB8P7 DPEP1 SPIRE2 PIEZO1 GAS8 ZNF778 LOC105371409 AFG3L1P FANCA CDH15 FAM157C VPS9D1-AS1 CHMP1A MVD LOC400558 VPS9D1 PRDM7 LOC105371414 TUBB3 CBFA2T3 DBNDD1 PABPN1L SPATA33 GALNS SNAI3 SNORD68 RNF166 LOC105371419 LOC107984817 ANKRD11 URAHP LOC100287036 LOC100129697 MIR4722 SLC22A31 CDT1 MC1R CPNE7 CDK10 TRAPPC2L RPL13 DEF8 ACSF3 LINC00304 SPG7 SPATA2L LOC107987238 LOC101927817 CTU2 CENPBD1 GAS8-AS1 TCF25 LOC100289580 LOC339059
dgv5320n54	Chr.16:89114475 - 89197443 on Build GRCh38	Loss	ACSF3 LINC00304 SLC22A31 CDH15 LOC400558
nsv509638	Chr.16:89152681 - 89296203 on Build GRCh38	Insertion	ACSF3 ZNF778 LINC00304 SLC22A31 CDH15 LOC400558 LOC105371414 ANKRD11
nsv573727	Chr.16:89169527 - 89193067 on Build GRCh38	Loss	CDH15

More Information

• Set Membership: Intragenic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Process(es)

cell adhesion
homophilic cell adhesion via plasma membrane adhesion molecules
adherens junction organization
positive regulation of muscle cell differentiation

Function(s)

calcium ion binding
protein binding