Assay Details
Target Gene Details
Entrez Gene ID: | 1192 |
Gene Name: | chloride intracellular channel 1 |
Gene Aliases: |
G6, NCC27 |
Location: |
Chr.6:31730581-31737318 on Build GRCh38 |
Assay Gene Location: | Overlaps Intron 1 - Exon 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CLIC1 | NM_001287593.1 | NP_001274522.1 | ||
BC064527.1 | AAH64527.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1126749 | Chr.6:31457323 - 32594423 on Build GRCh38 | Deletion | PPT2 LOC102725068 SAPCD1 C6orf47 CLIC1 STK19 GPANK1 HLA-DRB1 CSNK2B FKBPL C6orf25 CFB BTNL2 ATF6B DXO RNF5 SNORD52 NEU1 TNF DDAH2 LST1 DDX39B SAPCD1-AS1 LY6G6C TNXA LY6G6F PRRT1 EGFL8 CYP21A1P ZBTB12 SNORD48 HSPA1L MCCD1 PPT2-EGFL8 HSPA1A EHMT2 MICB PBX2 C6orf48 C2-AS1 SNORD117 TNXB LTB HCG23 NELFE C2 ATP6V1G2 LY6G6D MIR1236 MIR4646 ATP6V1G2-DDX39B SNORD84 SNORA38 AGPAT1 AIF1 C6orf10 SLC44A4 LY6G6E NFKBIL1 HSPA1B VWA7 GPSM3 BAG6 MIR6832 LOC100507547 ABHD16A HLA-DRB5 LTA VARS MSH5 HLA-DRB6 LOC100287329 HCG26 AGER HLA-DRA MSH5-SAPCD1 LOC101929163 APOM C4A HCP5 SKIV2L LY6G5C NCR3 NOTCH4 DDX39B-AS1 MIR6833 LSM2 PRRC2A C4B MIR6721 LY6G5B CYP21A2 |
nsv1073969 | Chr.6:31456422 - 33480523 on Build GRCh38 | Deletion | PPT2 MIR6834 CUTA STK19 TAPBP GPANK1 HLA-DOA HLA-DRB1 CSNK2B FKBPL HLA-DMB HSD17B8 ATF6B DXO MIR219A1 SNORD52 TNF DDAH2 LST1 MIR6873 TNXA RGL2 PRRT1 EGFL8 RPS18 ZBTB12 SNORD48 HSPA1L MCCD1 HSPA1A EHMT2 PFDN6 MICB RING1 PBX2 HLA-DPB2 C6orf48 HLA-DOB LOC100294145 TNXB LTB HCG23 LY6G6D SYNGAP1 ATP6V1G2-DDX39B TAP2 SNORD84 ZBTB9 AGPAT1 AIF1 SLC44A4 NFKBIL1 HSPA1B VPS52 GPSM3 BAG6 LOC100507547 ABHD16A PSMB8 HLA-DRB6 HCG26 MSH5-SAPCD1 APOM PSMB8-AS1 HCP5 SKIV2L HCG24 LY6G5C NCR3 NOTCH4 DDX39B-AS1 MIR6833 LSM2 PRRC2A MIR6721 LY6G5B B3GALT4 HLA-DQA1 CYP21A2 LOC102725068 SAPCD1 C6orf47 CLIC1 HCG25 HLA-DQB2 C6orf25 CFB HLA-DQA2 BTNL2 HLA-DPA1 RNF5 SLC39A7 NEU1 COL11A2 DDX39B SAPCD1-AS1 LY6G6C LY6G6F TAP1 CYP21A1P WDR46 PHF1 PPT2-EGFL8 ZBTB22 PPP1R2P1 RXRB C2-AS1 SNORD117 NELFE C2 ATP6V1G2 MIR1236 HLA-DQB1-AS1 MIR4646 SNORA38 MIR3135B C6orf10 DAXX LY6G6E VWA7 MIR6832 HLA-DQB1 HLA-DRB5 LTA VARS MSH5 LOC100287329 HLA-DPB1 MIR5004 HLA-DMA AGER HLA-DRA PSMB9 LOC101929163 KIFC1 C4A BRD2 C4B |
dgv10403n54 | Chr.6:31312324 - 32049763 on Build GRCh38 | Loss | LOC102725068 SAPCD1 C6orf47 CLIC1 STK19 GPANK1 CSNK2B C6orf25 CFB DXO SNORD52 NEU1 TNF DDAH2 LST1 DDX39B SAPCD1-AS1 LY6G6C TNXA LY6G6F CYP21A1P ZBTB12 SNORD48 HSPA1L MCCD1 HSPA1A EHMT2 MICB C6orf48 C2-AS1 SNORD117 TNXB LTB NELFE C2 ATP6V1G2 LY6G6D MICA MIR1236 MIR4646 ATP6V1G2-DDX39B SNORD84 SNORA38 AIF1 SLC44A4 LY6G6E NFKBIL1 HSPA1B MIR6891 VWA7 BAG6 MIR6832 ABHD16A LTA VARS MSH5 LOC100287329 HCG26 MSH5-SAPCD1 APOM C4A HCP5 SKIV2L LY6G5C NCR3 DDX39B-AS1 HLA-B LSM2 PRRC2A C4B LY6G5B CYP21A2 |
nsv1112900 | Chr.6:31455323 - 33480423 on Build GRCh38 | Deletion | PPT2 MIR6834 CUTA STK19 TAPBP GPANK1 HLA-DOA HLA-DRB1 CSNK2B FKBPL HLA-DMB HSD17B8 ATF6B DXO MIR219A1 SNORD52 TNF DDAH2 LST1 MIR6873 TNXA RGL2 PRRT1 EGFL8 RPS18 ZBTB12 SNORD48 HSPA1L MCCD1 HSPA1A EHMT2 PFDN6 MICB RING1 PBX2 HLA-DPB2 C6orf48 HLA-DOB LOC100294145 TNXB LTB HCG23 LY6G6D SYNGAP1 ATP6V1G2-DDX39B TAP2 SNORD84 ZBTB9 AGPAT1 AIF1 SLC44A4 NFKBIL1 HSPA1B VPS52 GPSM3 BAG6 LOC100507547 ABHD16A PSMB8 HLA-DRB6 HCG26 MSH5-SAPCD1 APOM PSMB8-AS1 HCP5 SKIV2L HCG24 LY6G5C NCR3 NOTCH4 DDX39B-AS1 MIR6833 LSM2 PRRC2A MIR6721 LY6G5B B3GALT4 HLA-DQA1 CYP21A2 LOC102725068 SAPCD1 C6orf47 CLIC1 HCG25 HLA-DQB2 C6orf25 CFB HLA-DQA2 BTNL2 HLA-DPA1 RNF5 SLC39A7 NEU1 COL11A2 DDX39B SAPCD1-AS1 LY6G6C LY6G6F TAP1 CYP21A1P WDR46 PHF1 PPT2-EGFL8 ZBTB22 PPP1R2P1 RXRB C2-AS1 SNORD117 NELFE C2 ATP6V1G2 MIR1236 HLA-DQB1-AS1 MIR4646 SNORA38 MIR3135B C6orf10 DAXX LY6G6E VWA7 MIR6832 HLA-DQB1 HLA-DRB5 LTA VARS MSH5 LOC100287329 HLA-DPB1 MIR5004 HLA-DMA AGER HLA-DRA PSMB9 LOC101929163 KIFC1 C4A BRD2 C4B |
dgv10404n54 | Chr.6:31312550 - 32516591 on Build GRCh38 | Loss | PPT2 LOC102725068 SAPCD1 C6orf47 CLIC1 STK19 GPANK1 CSNK2B FKBPL C6orf25 CFB BTNL2 ATF6B DXO RNF5 SNORD52 NEU1 TNF DDAH2 LST1 DDX39B SAPCD1-AS1 LY6G6C TNXA LY6G6F PRRT1 EGFL8 CYP21A1P ZBTB12 SNORD48 HSPA1L MCCD1 PPT2-EGFL8 HSPA1A EHMT2 MICB PBX2 C6orf48 C2-AS1 SNORD117 TNXB LTB HCG23 NELFE C2 ATP6V1G2 LY6G6D MICA MIR1236 MIR4646 ATP6V1G2-DDX39B SNORD84 SNORA38 AGPAT1 AIF1 C6orf10 SLC44A4 LY6G6E NFKBIL1 HSPA1B MIR6891 VWA7 GPSM3 BAG6 MIR6832 LOC100507547 ABHD16A LTA VARS MSH5 LOC100287329 HCG26 AGER HLA-DRA MSH5-SAPCD1 LOC101929163 APOM C4A HCP5 SKIV2L LY6G5C NCR3 NOTCH4 DDX39B-AS1 MIR6833 HLA-B LSM2 PRRC2A C4B MIR6721 LY6G5B CYP21A2 |
More Information
Set Membership: |
Intragenic Non-exonic DGV Variation |