Assay Details
Target Gene Details
Entrez Gene ID: | 6890 |
Gene Name: | transporter 1, ATP binding cassette subfamily B member |
Gene Aliases: |
ABC17, ABCB2, APT1, D6S114E, PSF-1, PSF1, RING4, TAP1*0102N, TAP1N |
Location: |
Chr.6:32845209-32853971 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
TAP1 | NM_000593.5 | NP_000584.2 | ||
NM_001292022.1 | NP_001278951.1 | |||
AB012644.1 | BAA32813.1 | |||
AK123494.1 | 1 | 767 | ||
AK302340.1 | ||||
AK313762.1 | ||||
AY523970.1 | AAS55411.1 | |||
AY523971.2 | AAS55412.1 | |||
BC014081.2 | AAH14081.1 | |||
BX648013.1 | ||||
KU178346.1 | ||||
KU178347.1 | ||||
L21204.1 | AAC12902.1 | |||
L21205.1 | AAC12903.1 | |||
L21206.1 | AAC12904.1 | |||
L21207.1 | AAC12905.1 | |||
L21208.1 | AAC12906.1 | |||
X57521.1 | CAA40740.1 | |||
X57522.1 | CAA40741.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1073969 | Chr.6:31456422 - 33480523 on Build GRCh38 | Deletion | LY6G6F CYP21A1P LOC100294145 VWA7 HLA-DRB5 FKBPL TNXB PSMB9 LTB CYP21A2 MSH5 HLA-DQB1 HLA-DQA1 C4B LOC102725068 BAG6 VPS52 MIR6833 MIR6721 ATP6V1G2-DDX39B MIR4646 SNORD52 HSD17B8 COL11A2 DDAH2 MIR6834 PPT2-EGFL8 VARS HCP5 CUTA HLA-DPB1 RING1 DDX39B-AS1 NFKBIL1 PBX2 HLA-DPA1 RGL2 EGFL8 RPS18 PSMB8-AS1 MIR6832 SNORA38 LTA HLA-DOB HLA-DRB6 LSM2 APOM C6orf47 LY6G6D NEU1 ZBTB12 WDR46 AIF1 TNXA LY6G5C PRRC2A SAPCD1-AS1 LY6G5B HSPA1A ATP6V1G2 PPP1R2P1 HCG23 PSMB8 HLA-DRA LOC100507547 SYNGAP1 HLA-DOA LST1 SKIV2L DAXX MIR6873 HCG24 HLA-DMA CSNK2B DDX39B SNORD117 C4A MIR5004 LOC101929163 BRD2 MCCD1 HLA-DQA2 C2-AS1 ZBTB22 HSPA1B KIFC1 PHF1 RXRB MICB AGER DXO HLA-DMB ZBTB9 HLA-DQB2 C6orf48 HLA-DQB1-AS1 PPT2 LY6G6E ATF6B SAPCD1 MIR219A1 NOTCH4 HCG26 SNORD84 GPSM3 PRRT1 SLC44A4 ABHD16A LOC100287329 C6orf25 MIR1236 RNF5 C2 NCR3 SNORD48 NELFE AGPAT1 EHMT2 CLIC1 TAP2 TAP1 C6orf10 HCG25 GPANK1 MSH5-SAPCD1 MIR3135B TNF BTNL2 HLA-DPB2 B3GALT4 CFB LY6G6C HLA-DRB1 TAPBP STK19 SLC39A7 HSPA1L PFDN6 |
nsv1112900 | Chr.6:31455323 - 33480423 on Build GRCh38 | Deletion | LY6G6F CYP21A1P LOC100294145 VWA7 HLA-DRB5 FKBPL TNXB PSMB9 LTB CYP21A2 MSH5 HLA-DQB1 HLA-DQA1 C4B LOC102725068 BAG6 VPS52 MIR6833 MIR6721 ATP6V1G2-DDX39B MIR4646 SNORD52 HSD17B8 COL11A2 DDAH2 MIR6834 PPT2-EGFL8 VARS HCP5 CUTA HLA-DPB1 RING1 DDX39B-AS1 NFKBIL1 PBX2 HLA-DPA1 RGL2 EGFL8 RPS18 PSMB8-AS1 MIR6832 SNORA38 LTA HLA-DOB HLA-DRB6 LSM2 APOM C6orf47 LY6G6D NEU1 ZBTB12 WDR46 AIF1 TNXA LY6G5C PRRC2A SAPCD1-AS1 LY6G5B HSPA1A ATP6V1G2 PPP1R2P1 HCG23 PSMB8 HLA-DRA LOC100507547 SYNGAP1 HLA-DOA LST1 SKIV2L DAXX MIR6873 HCG24 HLA-DMA CSNK2B DDX39B SNORD117 C4A MIR5004 LOC101929163 BRD2 MCCD1 HLA-DQA2 C2-AS1 ZBTB22 HSPA1B KIFC1 PHF1 RXRB MICB AGER DXO HLA-DMB ZBTB9 HLA-DQB2 C6orf48 HLA-DQB1-AS1 PPT2 LY6G6E ATF6B SAPCD1 MIR219A1 NOTCH4 HCG26 SNORD84 GPSM3 PRRT1 SLC44A4 ABHD16A LOC100287329 C6orf25 MIR1236 RNF5 C2 NCR3 SNORD48 NELFE AGPAT1 EHMT2 CLIC1 TAP2 TAP1 C6orf10 HCG25 GPANK1 MSH5-SAPCD1 MIR3135B TNF BTNL2 HLA-DPB2 B3GALT4 CFB LY6G6C HLA-DRB1 TAPBP STK19 SLC39A7 HSPA1L PFDN6 |
nsv830633 | Chr.6:32829085 - 32995634 on Build GRCh38 | Loss | HLA-DMB TAP2 PSMB9 PSMB8-AS1 TAP1 LOC100294145 HLA-DMA PPP1R2P1 BRD2 PSMB8 |
nsv1119076 | Chr.6:32595823 - 33480623 on Build GRCh38 | Deletion | HLA-DPA1 RGL2 RPS18 PSMB8-AS1 LOC100294145 HLA-DOB BRD2 HLA-DQA2 TAP2 PSMB9 ZBTB22 TAP1 KIFC1 WDR46 HCG25 PHF1 HLA-DQB1 HLA-DQA1 VPS52 RXRB HSD17B8 HLA-DMB COL11A2 MIR6834 MIR3135B ZBTB9 HLA-DQB2 PPP1R2P1 PSMB8 HLA-DPB2 HLA-DQB1-AS1 SYNGAP1 HLA-DOA CUTA B3GALT4 DAXX MIR219A1 MIR6873 HLA-DPB1 HCG24 RING1 HLA-DMA TAPBP SLC39A7 MIR5004 PFDN6 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |