Assay Details
Target Gene Details
Entrez Gene ID: | 10417 |
Gene Name: | spondin 2 |
Gene Aliases: |
DIL-1, DIL1, M-SPONDIN, MINDIN |
Location: |
Chr.4:1166932-1208962 on Build GRCh38 |
Assay Gene Location: | Within Intron 8 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SPON2 | NM_001128325.2 | NP_001121797.1 | ||
NM_001199021.1 | NP_001185950.1 | |||
NM_012445.3 | NP_036577.1 | |||
AB027466.1 | BAA85892.1 | |||
AK024499.1 | 2 | 2842 | BAB15789.1 | |
AK026054.1 | 1 | 1351 | ||
AK074618.1 | BAC11092.1 | |||
AK074770.1 | BAC11196.1 | |||
AK130164.1 | ||||
AY358948.1 | AAQ89307.1 | |||
BC002707.2 | AAH02707.1 | |||
BC036341.1 | AAH36341.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv822425 | Chr.4:546316 - 1420011 on Build GRCh38 | Loss | CTBP1-AS2 MAEA CRIPAK GAK ATP5I TMED11P CPLX1 MYL5 CTBP1-AS PCGF3 DGKQ LOC100129917 IDUA LOC107986211 UVSSA SPON2 LOC105374344 LOC101928548 RNF212 PDE6B LOC100130872 LOC101928521 FGFRL1 SLC26A1 CTBP1 MFSD7 TMEM175 NKX1-1 |
nsv593278 | Chr.4:1165892 - 1421910 on Build GRCh38 | Loss | LOC100130872 CTBP1-AS2 UVSSA SPON2 LOC101928548 CTBP1-AS CTBP1 MAEA CRIPAK NKX1-1 |
nsv950331 | Chr.4:1164113 - 1239212 on Build GRCh38 | Deletion | LOC100130872 SPON2 LOC101928548 CTBP1-AS CTBP1 |
nsv519106 | Chr.4:1165203 - 1181073 on Build GRCh38 | Loss | SPON2 |
nsv1012892 | Chr.4:1093083 - 1182842 on Build GRCh38 | Loss | TMED11P SPON2 LOC105374344 RNF212 |
nsv829835 | Chr.4:1103798 - 1310451 on Build GRCh38 | Gain | LOC100130872 TMED11P CTBP1-AS2 SPON2 LOC105374344 LOC101928548 RNF212 CTBP1-AS CTBP1 MAEA |
More Information
Additional Information:
For this assay, SNP(s) [rs375956700] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |