Assay Details
Target Gene Details
Entrez Gene ID: | 25759 |
Gene Name: | SHC adaptor protein 2 |
Gene Aliases: |
SCK, SHCB, SLI |
Location: |
Chr.19:416583-461011 on Build GRCh38 |
Assay Gene Location: | Within Intron 13 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SHC2 | NM_012435.2 | NP_036567.2 | ||
XM_011527895.2 | XP_011526197.1 | |||
AB001451.1 | BAA25798.1 | |||
AL360254.1 | CAB96175.1 | |||
BY796046.2 | ||||
CF457169.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv509712 | Chr.19:391096 - 558643 on Build GRCh38 | Insertion | MADCAM1 C2CD4C TPGS1 ODF3L2 CDC34 GZMM SHC2 |
dgv6155n54 | Chr.19:404077 - 519032 on Build GRCh38 | Loss | MADCAM1 C2CD4C TPGS1 ODF3L2 SHC2 |
nsv428360 | Chr.19:232069 - 702131 on Build GRCh38 | Gain | MADCAM1 HCN2 LOC101929060 BSG FSTL3 POLRMT GZMM RNF126 SHC2 PLPP2 C2CD4C TPGS1 ODF3L2 THEG FGF22 MIER2 CDC34 PRSS57 |
dgv1013e212 | Chr.19:416231 - 521269 on Build GRCh38 | Gain | MADCAM1 TPGS1 ODF3L2 SHC2 |
esv2671474 | Chr.19:393636 - 481273 on Build GRCh38 | Deletion | C2CD4C ODF3L2 SHC2 |
nsv1065558 | Chr.19:305266 - 441626 on Build GRCh38 | Gain | C2CD4C THEG MIER2 SHC2 |
dgv6153n54 | Chr.19:404026 - 423625 on Build GRCh38 | Loss | C2CD4C SHC2 |
nsv578091 | Chr.19:411849 - 431187 on Build GRCh38 | Gain | SHC2 |
nsv577978 | Chr.19:294526 - 782854 on Build GRCh38 | Gain | MADCAM1 HCN2 LOC101929060 BSG FSTL3 POLRMT GZMM RNF126 SHC2 LOC101928450 C2CD4C TPGS1 ODF3L2 THEG FGF22 MIER2 CDC34 MISP PALM PRSS57 |
nsv953938 | Chr.19:355801 - 1104501 on Build GRCh38 | Deletion | MADCAM1 CNN2 LOC105372235 MIR4745 GPX4 GRIN3B BSG POLRMT CFD GZMM RNF126 TPGS1 ODF3L2 POLR2E THEG MIR3187 CDC34 TMEM259 PRSS57 ELANE RNU6-2 ARHGAP45 WDR18 ABCA7 HCN2 FSTL3 ARID3A SHC2 LOC101928450 AZU1 PTBP1 C2CD4C RNU6-9 R3HDM4 KISS1R FGF22 PLPPR3 MED16 PRTN3 MISP PALM |
nsv470101 | Chr.19:401714 - 1008505 on Build GRCh38 | Loss | MADCAM1 LOC105372235 MIR4745 GRIN3B BSG POLRMT CFD GZMM RNF126 TPGS1 ODF3L2 MIR3187 CDC34 PRSS57 ELANE WDR18 HCN2 FSTL3 ARID3A SHC2 LOC101928450 AZU1 PTBP1 C2CD4C RNU6-9 R3HDM4 KISS1R FGF22 PLPPR3 MED16 PRTN3 MISP PALM |
More Information
Additional Information:
For this assay, SNP(s) [rs73507717] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |