Assay Details
Target Gene Details
Entrez Gene ID: | 6360 |
Gene Name: | C-C motif chemokine ligand 16 |
Gene Aliases: |
CKb12, HCC-4, ILINCK, LCC-1, LEC, LMC, Mtn-1, NCC-4, NCC4, SCYA16, SCYL4 |
Location: |
Chr.17:35976493-35983620 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
CCL16 | XM_005258020.4 | XP_005258077.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv1059795 | Chr.17:35828724 - 36157706 on Build GRCh38 | Gain | CCL16 TAF15 CCL3 CCL15-CCL14 CCL14 HEATR9 RDM1 CCL4 CCL18 LYZL6 CCL15 CCL5 LOC101927339 LRRC37A8P CCL23 |
nsv833427 | Chr.17:35958281 - 36115227 on Build GRCh38 | Loss | CCL18 CCL15 CCL16 CCL3 LOC101927339 CCL15-CCL14 CCL14 CCL4 CCL23 |
nsv833424 | Chr.17:35911883 - 36092128 on Build GRCh38 | Gain | CCL18 LYZL6 CCL15 CCL16 CCL3 LOC101927339 CCL15-CCL14 CCL14 RDM1 CCL23 |
More Information
Additional Information:
For this assay, SNP(s) [rs76190126] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |