Hs04457473_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89892072 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 7

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AB028972.1			BAA83001.1
	AF130092.1			AAG35518.1
	AF322111.1			AAG50276.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	ZNF276 LOC107984817 TCF25 LOC105371419 SPIRE2 FANCA
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC107984817 TCF25 LOC105371419 SPIRE2 FANCA
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	DPEP1 MC1R TCF25 LOC105371419 FANCA AFG3L1P SPATA2L CENPBD1 DEF8 CDK10 CHMP1A ZNF276 SPATA33 TUBB3 VPS9D1 GAS8 LOC107984817 SPIRE2 GAS8-AS1 VPS9D1-AS1 DBNDD1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	TUBB3 GAS8 MC1R TCF25 SPIRE2 GAS8-AS1 AFG3L1P CENPBD1 DBNDD1 DEF8
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	TCF25 LOC105371419 FANCA AFG3L1P CENPBD1 PRDM7 CHMP1A LOC100287036 ZNF276 URAHP SNORD68 TUBB3 GAS8 FAM157C LOC105371414 SPIRE2 RPL13 LOC101927817 SPG7 DPEP1 CPNE7 MC1R TUBB8P7 SPATA2L DEF8 CDK10 ZNF778 SPATA33 VPS9D1 LOC107984817 GAS8-AS1 ANKRD11 VPS9D1-AS1 DBNDD1
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	TUBB3 GAS8 MC1R TCF25 LOC105371419 SPIRE2 AFG3L1P CENPBD1 DBNDD1 DEF8
nsv1066499	Chr.16:89891957 - 90028891 on Build GRCh38	Loss	TUBB3 GAS8 MC1R TCF25 AFG3L1P CENPBD1 DBNDD1 DEF8
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	SLC22A31 LOC107987238 GALNS PABPN1L LOC105371419 LOC101927793 PRDM7 LOC100287036 ZNF276 URAHP GAS8 FAM157C LOC105371414 MVD PIEZO1 CBFA2T3 RPL13 SPG7 CPNE7 CDT1 TUBB8P7 APRT SPATA2L ZNF778 LOC400558 IL17C DBNDD1 MIR4722 RNF166 LOC100129697 TCF25 FANCA AFG3L1P CENPBD1 LINC00304 CHMP1A LOC100289580 SNORD68 TUBB3 SPIRE2 LOC339059 LOC101927817 DPEP1 CYBA MC1R ACSF3 CTU2 LOC105371409 CDH15 SNAI3 DEF8 CDK10 SPATA33 VPS9D1 SNAI3-AS1 TRAPPC2L LOC107984817 GAS8-AS1 ANKRD11 VPS9D1-AS1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding