Assay Details
Target Gene Details
Entrez Gene ID: | 6527 |
Gene Name: | solute carrier family 5 member 4 |
Gene Aliases: |
DJ90G24.4, SAAT1, SGLT3 |
Location: |
Chr.22:32218423-32355057 on Build GRCh38 |
Assay Gene Location: | Within Intron 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SLC5A4 | NM_014227.2 | NP_055042.1 | ||
XM_006724308.3 | XP_006724371.1 | |||
XM_011530342.2 | XP_011528644.1 | |||
XM_011530343.2 | XP_011528645.1 | |||
XM_011530344.2 | XP_011528646.1 | |||
XM_017028920.1 | XP_016884409.1 | |||
AJ133127.1 | CAB81772.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv3575476 | Chr.22:32073030 - 32383792 on Build GRCh38 | Gain | LOC339666 C22orf42 RFPL2 RFPL3 SLC5A1 RFPL3S SLC5A4 AP1B1P1 |
nsv459874 | Chr.22:32178287 - 32470947 on Build GRCh38 | Gain | LOC339666 RTCB RFPL2 RFPL3 RFPL3S BPIFC SLC5A4 |
esv3893474 | Chr.22:32054375 - 32387314 on Build GRCh38 | Gain | LOC339666 C22orf42 RFPL2 RFPL3 SLC5A1 RFPL3S SLC5A4 AP1B1P1 |
esv3893475 | Chr.22:32228077 - 32260035 on Build GRCh38 | Gain | SLC5A4 |
nsv834178 | Chr.22:32094462 - 32281534 on Build GRCh38 | Loss | C22orf42 RFPL2 SLC5A1 SLC5A4 AP1B1P1 |
nsv3597 | Chr.22:32192437 - 32236737 on Build GRCh38 | Deletion | RFPL2 SLC5A4 |
esv2422247 | Chr.22:32090461 - 32392271 on Build GRCh38 | Duplication | LOC339666 RTCB C22orf42 RFPL2 RFPL3 SLC5A1 RFPL3S SLC5A4 AP1B1P1 |
More Information
Additional Information:
For this assay, SNP(s) [rs78335429] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |