Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | NP_067051.2 | ||
XM_005259122.4 | XP_005259179.1 | |||
XM_011527194.2 | XP_011525496.1 | |||
AK024444.1 | ||||
BC011662.2 | AAH11662.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | PRMT1 NOSIP PRR12 IRF3 SCAF1 ADM5 BCL2L12 RRAS MIR5088 CPT1C PRRG2 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | PRMT1 NOSIP PRR12 IRF3 SCAF1 ADM5 BCL2L12 RRAS MIR5088 CPT1C PRRG2 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | NUCB1-AS1 CD37 CYTH2 LIN7B PLEKHA4 RPL13A ADM5 SNAR-B1 SNAR-C4 ATF5 SNAR-A3 PPFIA3 CA11 AP2A1 CGB5 FLT3LG PTOV1 NOSIP MIR4750 PLA2G4C PTOV1-AS1 SCAF1 DBP MIR6799 DKKL1 SLC17A7 DHDH TULP2 SNAR-A1 BSPH1 NTN5 LIG1 SNAR-A9 SYNGR4 NUP62 GYS1 PPP1R15A LOC101928295 SNAR-A13 SNAR-A7 NTF4 CGB2 MED25 KCNJ14 SNAR-A6 SNAR-C2 SNORD33 MIR4751 FGF21 ZNF473 EMP3 LOC101059948 SNAR-A12 LOC105447645 CGB3 BCAT2 KCNA7 RASIP1 CGB1 RRAS CCDC155 PTH2 SPACA4 PRR12 SNAR-A5 CGB8 ZNF114 SNAR-A8 HSD17B14 MIR6800 GFY SPHK2 SNORD35B PLA2G4C-AS1 SIGLEC11 RCN3 SNAR-A14 LOC100287477 PTOV1-AS2 SNAR-A10 BCL2L12 SNAR-A4 SNAR-B2 TRPM4 SNAR-G2 PRRG2 FUT2 GRIN2D RPL18 IRF3 LHB SNAR-G1 ALDH16A1 KDELR1 FTL TBC1D17 MAMSTR CCDC114 TEAD2 MIR4324 TMEM143 PIH1D1 SNAR-C3 VRK3 MIR5088 RUVBL2 FLJ26850 SNORD34 SLC6A16 MIR150 GRWD1 C19orf68 SEC1P SNAR-D FUZ FUT1 LMTK3 ELSPBP1 SNAR-C5 RPS11 MIR6798 LOC105372430 CARD8 IZUMO1 PRMT1 SNAR-A11 SNAR-A2 IL4I1 FAM83E SNAR-C1 SIGLEC16 MIR4749 CARD8-AS1 CABP5 SULT2B1 CPT1C AKT1S1 FCGRT NUCB1 SNORD32A HRC C19orf73 BAX PNKP TSKS SNRNP70 CGB7 SNORD35A |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | PRMT1 PRR12 IRF3 SCAF1 ADM5 BCL2L12 RRAS MIR5088 CPT1C |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | MIR6800 MED25 FUZ PTOV1-AS2 MIR4751 ADM5 BCL2L12 ATF5 AP2A1 PRRG2 PRMT1 PTOV1 NOSIP MIR4750 IL4I1 PTOV1-AS1 IRF3 SCAF1 MIR6799 RRAS MIR4749 CPT1C AKT1S1 TBC1D17 PRR12 NUP62 MIR5088 PNKP TSKS |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | PRMT1 NOSIP PRR12 IRF3 SCAF1 ADM5 BCL2L12 RRAS MIR5088 CPT1C PRRG2 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | MIR150 MIR6800 MED25 FUZ SNORD35B RCN3 SNORD33 RPL13A ADM5 BCL2L12 RPS11 AP2A1 PRRG2 PRMT1 NOSIP PTOV1-AS1 IRF3 SCAF1 MIR6799 RRAS CPT1C FCGRT PRR12 SNORD32A MIR5088 SNORD34 TSKS SNORD35A |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | PRMT1 NOSIP PRR12 IRF3 SCAF1 BCL2L12 RRAS PRRG2 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |