Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | NP_067051.2 | ||
XM_005259122.4 | XP_005259179.1 | |||
XM_011527194.2 | XP_011525496.1 | |||
AK024444.1 | ||||
BC011662.2 | AAH11662.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | CPT1C BCL2L12 PRRG2 SCAF1 RRAS MIR5088 ADM5 PRR12 PRMT1 NOSIP IRF3 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | CPT1C BCL2L12 PRRG2 SCAF1 RRAS MIR5088 ADM5 PRR12 PRMT1 NOSIP IRF3 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | CCDC155 VRK3 TSKS CARD8-AS1 SNORD32A BCAT2 SULT2B1 MIR4751 LMTK3 EMP3 SNORD35B SLC6A16 SNAR-C2 BAX FUT2 CD37 SLC17A7 GRWD1 LHB CGB8 FLJ26850 DHDH PLA2G4C CGB2 NUCB1-AS1 FTL SNORD33 CARD8 BSPH1 ZNF473 SNAR-B2 LOC105372430 SNAR-D KCNJ14 C19orf68 KDELR1 FUZ SNAR-A3 SPACA4 TULP2 NOSIP TRPM4 SNAR-A1 CGB5 CCDC114 DKKL1 PRRG2 RUVBL2 PPFIA3 C19orf73 PTOV1 AP2A1 CPT1C SIGLEC11 BCL2L12 SNAR-A4 NUP62 RCN3 SNRNP70 SNAR-A11 SNAR-B1 RASIP1 SNAR-C4 NUCB1 IL4I1 LIG1 CYTH2 CGB3 ATF5 PTOV1-AS2 ALDH16A1 LIN7B SNAR-A9 NTN5 CGB1 PLEKHA4 MIR4750 MAMSTR SPHK2 MIR6799 TMEM143 SNORD34 DBP PRMT1 IZUMO1 MED25 SNAR-G2 SIGLEC16 FUT1 PPP1R15A KCNA7 HRC HSD17B14 SNAR-A8 TEAD2 GRIN2D SYNGR4 RPL13A SNAR-A13 MIR4749 RPS11 FLT3LG PNKP MIR4324 SNAR-C1 MIR6800 FCGRT ELSPBP1 NTF4 SNAR-A6 PTOV1-AS1 CGB7 SNAR-A7 SNAR-A5 IRF3 SNAR-G1 TBC1D17 LOC101928295 PIH1D1 FAM83E LOC105447645 PRR12 SNAR-A10 SNAR-C5 RPL18 CABP5 SNAR-C3 MIR150 FGF21 MIR6798 MIR5088 SNAR-A12 PTH2 SNORD35A CA11 SNAR-A2 SCAF1 LOC101059948 RRAS GYS1 ADM5 LOC100287477 GFY AKT1S1 SNAR-A14 SEC1P ZNF114 PLA2G4C-AS1 |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | CPT1C BCL2L12 SCAF1 RRAS MIR5088 ADM5 PRR12 PRMT1 IRF3 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | TBC1D17 TSKS MIR4750 FUZ MIR6799 PRR12 NOSIP MIR4751 PRRG2 PTOV1 AP2A1 MIR5088 PRMT1 MED25 CPT1C BCL2L12 SCAF1 NUP62 RRAS ADM5 IL4I1 MIR4749 AKT1S1 PNKP MIR6800 ATF5 PTOV1-AS1 PTOV1-AS2 IRF3 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | CPT1C BCL2L12 PRRG2 SCAF1 RRAS MIR5088 ADM5 PRR12 PRMT1 NOSIP IRF3 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | TSKS FUZ SNORD32A MIR6799 PRR12 NOSIP PRRG2 MIR150 SNORD35B AP2A1 MIR5088 SNORD34 PRMT1 MED25 CPT1C BCL2L12 SNORD35A SCAF1 RCN3 RRAS ADM5 RPL13A RPS11 SNORD33 MIR6800 FCGRT PTOV1-AS1 IRF3 |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | BCL2L12 PRRG2 SCAF1 RRAS PRR12 PRMT1 NOSIP IRF3 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |