Assay Details
Target Gene Details
Entrez Gene ID: | 53635 |
Gene Name: | prostate tumor overexpressed 1 |
Gene Aliases: |
ACID2, PTOV-1 |
Location: |
Chr.19:49850726-49860744 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PTOV1 | NM_001305105.1 | NP_001292034.1 | ||
NM_001305108.1 | NP_001292037.1 | |||
NM_017432.4 | NP_059128.2 | |||
NR_130963.1 | ||||
XM_005258998.4 | XP_005259055.1 | |||
XM_006723244.3 | XP_006723307.1 | |||
XM_011527033.1 | XP_011525335.1 | |||
XM_011527034.2 | XP_011525336.1 | |||
XM_011527035.1 | XP_011525337.1 | |||
XM_017026879.1 | XP_016882368.1 | |||
XM_017026880.1 | XP_016882369.1 | |||
AJ617480.1 | CAE84582.1 | |||
AK057817.1 | ||||
AY358168.1 | AAQ88535.1 | |||
U79287.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | SNAR-C5 NUCB1-AS1 SULT2B1 SNAR-D SNAR-A1 RPL13A BAX RUVBL2 PPP1R15A SIGLEC16 RPS11 SNAR-A13 SPHK2 C19orf73 PLA2G4C GYS1 SNORD34 PRRG2 TBC1D17 RRAS SNAR-C2 SEC1P MIR150 LIN7B PRR12 HSD17B14 ADM5 KCNA7 SNAR-A10 SNAR-G1 PTOV1-AS2 ALDH16A1 CYTH2 FUT2 SNAR-C3 SCAF1 PTOV1-AS1 MIR6798 ATF5 LHB FLT3LG SNORD32A RPL18 PTH2 LIG1 TSKS CCDC114 NUP62 CD37 SNAR-A2 SNAR-C1 SNORD35B GRWD1 LOC101059948 SNRNP70 TULP2 FTL BSPH1 PLEKHA4 IRF3 VRK3 NOSIP HRC LOC105372430 SNAR-A8 MIR5088 CCDC155 SNAR-A9 C19orf68 SNAR-C4 FUZ LOC101928295 KCNJ14 CGB3 TRPM4 SNAR-A5 MIR6799 SLC17A7 GFY FUT1 KDELR1 CARD8-AS1 SPACA4 EMP3 TEAD2 SNAR-B1 BCAT2 GRIN2D MIR4750 RCN3 SNORD33 AP2A1 PIH1D1 PRMT1 NTF4 AKT1S1 FLJ26850 DBP ZNF473 SIGLEC11 TMEM143 RASIP1 NUCB1 SNAR-A12 SNAR-A6 LMTK3 CA11 SLC6A16 SNORD35A BCL2L12 SNAR-A4 CGB5 IL4I1 CARD8 FAM83E CABP5 CPT1C ZNF114 PLA2G4C-AS1 SNAR-B2 CGB2 CGB8 DHDH LOC105447645 MIR6800 DKKL1 FCGRT PNKP CGB7 SNAR-A14 MAMSTR PTOV1 SNAR-A3 LOC100287477 MIR4749 NTN5 FGF21 SNAR-A7 CGB1 SNAR-A11 MIR4751 PPFIA3 SNAR-G2 SYNGR4 MED25 IZUMO1 MIR4324 ELSPBP1 |
nsv526372 | Chr.19:49853907 - 49877601 on Build GRCh38 | Loss | TBC1D17 PNKP PTOV1-AS2 PTOV1 AKT1S1 MIR4749 |
nsv470150 | Chr.19:49618821 - 49856789 on Build GRCh38 | Gain | RRAS PTOV1-AS1 IRF3 MIR6800 PRR12 MIR5088 ADM5 BCL2L12 MED25 TSKS PTOV1-AS2 FUZ PTOV1 AP2A1 PRMT1 CPT1C MIR4749 MIR6799 SCAF1 |
dgv53n68 | Chr.19:49724393 - 49943224 on Build GRCh38 | Loss | TBC1D17 PTOV1-AS1 MIR4751 MIR6800 ATF5 PNKP MIR4750 IL4I1 MED25 TSKS PTOV1-AS2 FUZ PTOV1 NUP62 AP2A1 AKT1S1 MIR4749 MIR6799 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | PTOV1-AS1 MIR6800 ATF5 PNKP MIR4750 TSKS PTOV1 NUP62 AP2A1 PRMT1 AKT1S1 MIR4749 PRRG2 TBC1D17 RRAS IRF3 NOSIP MIR4751 PRR12 MIR5088 ADM5 BCL2L12 IL4I1 MED25 PTOV1-AS2 FUZ CPT1C MIR6799 SCAF1 |
dgv54n68 | Chr.19:49848512 - 50008788 on Build GRCh38 | Loss | TBC1D17 PTOV1-AS1 VRK3 MIR4751 ATF5 SIGLEC16 PNKP MIR4750 IL4I1 PTOV1-AS2 PTOV1 NUP62 AKT1S1 MIR4749 SIGLEC11 |
More Information
Additional Information:
For this assay, SNP(s) [rs74546599] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |