Assay Details
Target Gene Details
Entrez Gene ID: | 58506 |
Gene Name: | SR-related CTD associated factor 1 |
Gene Aliases: |
SRA1 |
Location: |
Chr.19:49640483-49658649 on Build GRCh38 |
Assay Gene Location: | Within Intron 11 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SCAF1 | NM_021228.2 | NP_067051.2 | ||
XM_005259122.4 | XP_005259179.1 | |||
XM_011527194.2 | XP_011525496.1 | |||
XM_017027083.1 | XP_016882572.1 | |||
AK024444.1 | ||||
BC011662.2 | AAH11662.2 | |||
BC018398.1 | AAH18398.1 | |||
BC053992.1 | AAH53992.1 | |||
BQ896877.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv469715 | Chr.19:49572544 - 49730286 on Build GRCh38 | Gain+Loss | ADM5 CPT1C BCL2L12 RRAS PRRG2 MIR5088 PRMT1 PRR12 NOSIP IRF3 SCAF1 |
nsv833865 | Chr.19:49572545 - 49730286 on Build GRCh38 | Gain+Loss | ADM5 CPT1C BCL2L12 RRAS PRRG2 MIR5088 PRMT1 PRR12 NOSIP IRF3 SCAF1 |
nsv9739 | Chr.19:47901840 - 50143063 on Build GRCh38 | Gain+Loss | GFY CABP5 CGB5 SEC1P CD37 CPT1C VRK3 GYS1 SNAR-G1 PIH1D1 SNORD35A FTL RASIP1 C19orf73 PLA2G4C BCAT2 MIR4324 FCGRT AP2A1 HSD17B14 NTF4 CCDC155 MIR150 DHDH NOSIP CARD8 PLEKHA4 SNORD34 SNAR-C2 SNAR-A4 RUVBL2 SNAR-A12 SNAR-A3 CCDC114 PLA2G4C-AS1 TRPM4 SNRNP70 PTOV1-AS2 ALDH16A1 PTOV1-AS1 FAM83E ADM5 SPACA4 AKT1S1 SIGLEC11 KCNA7 DBP SYNGR4 SLC6A16 LMTK3 PRRG2 LHB KCNJ14 SNAR-C3 IRF3 SNAR-B2 SNAR-A5 FUT2 SNAR-C4 LOC105372430 C19orf68 TMEM143 RPL13A NUCB1 SNAR-A10 LOC100287477 LIN7B ZNF114 ATF5 SNAR-A14 SNAR-A1 MIR4751 SPHK2 TBC1D17 SNAR-A7 FGF21 CA11 LOC101928295 SNAR-A6 SNAR-B1 MIR6799 FUT1 BCL2L12 RRAS BSPH1 SNORD35B SNORD33 NUP62 MIR4750 HRC IZUMO1 MIR5088 FLJ26850 SCAF1 PTOV1 SNAR-A13 BAX MIR6798 LOC105447645 CGB2 SNAR-C5 SNORD32A NUCB1-AS1 GRWD1 TEAD2 PPP1R15A PNKP CGB7 SNAR-A2 MIR4749 SNAR-G2 LIG1 MED25 CGB1 RCN3 SNAR-C1 SNAR-A8 CGB8 TULP2 SIGLEC16 LOC101059948 IL4I1 ZNF473 DKKL1 MIR6800 SNAR-A9 RPS11 KDELR1 CGB3 PTH2 CARD8-AS1 SNAR-A11 SLC17A7 PRMT1 PPFIA3 FLT3LG SULT2B1 CYTH2 SNAR-D PRR12 RPL18 GRIN2D NTN5 FUZ EMP3 TSKS MAMSTR ELSPBP1 |
nsv817854 | Chr.19:49618821 - 49726387 on Build GRCh38 | Gain | ADM5 CPT1C BCL2L12 RRAS MIR5088 PRMT1 PRR12 IRF3 SCAF1 |
nsv579909 | Chr.19:49649784 - 49659652 on Build GRCh38 | Loss | IRF3 SCAF1 |
nsv953600 | Chr.19:49555044 - 49938043 on Build GRCh38 | Deletion | CPT1C PRRG2 IL4I1 MIR5088 MIR6800 IRF3 SCAF1 PTOV1 AP2A1 PRMT1 NOSIP ATF5 PNKP MIR4751 TBC1D17 PRR12 MIR4749 PTOV1-AS2 PTOV1-AS1 MED25 ADM5 AKT1S1 MIR6799 BCL2L12 RRAS FUZ TSKS NUP62 MIR4750 |
nsv833864 | Chr.19:49551790 - 49733819 on Build GRCh38 | Gain | ADM5 CPT1C BCL2L12 RRAS PRRG2 MIR5088 PRMT1 PRR12 NOSIP IRF3 SCAF1 |
nsv1160655 | Chr.19:49489110 - 49841830 on Build GRCh38 | Deletion | CPT1C PRRG2 MIR5088 MIR6800 IRF3 SCAF1 RPS11 SNORD35A FCGRT AP2A1 MIR150 PRMT1 NOSIP SNORD32A SNORD34 RPL13A PRR12 PTOV1-AS1 MED25 ADM5 RCN3 MIR6799 BCL2L12 RRAS FUZ SNORD35B TSKS SNORD33 |
nsv828578 | Chr.19:49560777 - 49680548 on Build GRCh38 | Loss | BCL2L12 RRAS PRRG2 PRMT1 PRR12 NOSIP IRF3 SCAF1 |
nsv579908 | Chr.19:49645135 - 49663393 on Build GRCh38 | Loss | IRF3 SCAF1 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |