Hs03953793_cn

• Gene Symbol: RBFOX1
• Assay Reference Genome Location: Chr.16:5296278 on build GRCh38
• Cytoband: 16p13.3

Target Gene Details

• Entrez Gene ID: 54715
• Gene Name: RNA binding protein, fox-1 homolog 1
• Gene Aliases: 2BP1, A2BP1, FOX-1, FOX1, HRNBP1
• Location: Chr.16:5239749-7713343 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
RBFOX1	XM_017023319.1			XP_016878808.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv1035156	Chr.16:5091032 - 5996934 on Build GRCh38	Gain	EEF2KMT RBFOX1 MIR8065 LINC01570
nsv9341	Chr.16:5296147 - 5303270 on Build GRCh38	Gain+Loss	RBFOX1
nsv1036241	Chr.16:5271882 - 5387609 on Build GRCh38	Loss	RBFOX1
nsv428318	Chr.16:5011594 - 5374828 on Build GRCh38	Gain	EEF2KMT SEC14L5 RBFOX1 NAGPA-AS1 ALG1 NAGPA C16orf89
esv2762021	Chr.16:5293419 - 5377238 on Build GRCh38	Loss	RBFOX1
nsv1037303	Chr.16:5287645 - 5327595 on Build GRCh38	Loss	RBFOX1
nsv516117	Chr.16:5235393 - 5301110 on Build GRCh38	Loss	RBFOX1
dgv2696n100	Chr.16:5114681 - 5298137 on Build GRCh38	Loss	RBFOX1
esv3637713	Chr.16:4957958 - 5307305 on Build GRCh38	Gain	EEF2KMT SEC14L5 RBFOX1 NAGPA-AS1 ALG1 NAGPA C16orf89
nsv1046986	Chr.16:4049000 - 5555721 on Build GRCh38	Gain	EEF2KMT VASN GLIS2-AS1 ZNF500 UBALD1 SEPT12 ADCY9 NAGPA-AS1 CORO7 LOC105371063 PPL ANKS3 C16orf96 PAM16 TFAP4 ROGDI NMRAL1 UBN1 SRL GLYR1 DNAJA3 CDIP1 SEC14L5 RBFOX1 C16orf71 ALG1 CORO7-PAM16 HMOX2 NUDT16L1 MIR6769A LINC01569 NAGPA SMIM22 GLIS2 C16orf89 MGRN1
nsv1045304	Chr.16:5205761 - 5326875 on Build GRCh38	Loss	RBFOX1
esv34300	Chr.16:5005938 - 5322534 on Build GRCh38	Gain	EEF2KMT SEC14L5 RBFOX1 NAGPA-AS1 ALG1 NAGPA C16orf89
nsv1038475	Chr.16:5004985 - 5310633 on Build GRCh38	Gain	EEF2KMT SEC14L5 RBFOX1 NAGPA-AS1 ALG1 NAGPA C16orf89
esv2760069	Chr.16:4922849 - 5374828 on Build GRCh38	Gain+Loss	EEF2KMT SEC14L5 RBFOX1 NAGPA-AS1 ALG1 NAGPA PPL C16orf89
nsv817715	Chr.16:5006294 - 5309352 on Build GRCh38	Gain	EEF2KMT SEC14L5 RBFOX1 NAGPA-AS1 ALG1 NAGPA C16orf89

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

RNA metabolism protein, RNA processing factor, RNA splicing factor, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
mRNA processing
nervous system development
RNA splicing
RNA transport

Function(s)

nucleotide binding
RNA binding
mRNA binding
protein binding
protein C-terminus binding