Assay Details
Target Gene Details
Entrez Gene ID: | 9727 |
Gene Name: | RAB11 family interacting protein 3 |
Gene Aliases: |
CART1, Rab11-FIP3 |
Location: |
Chr.16:425621-522485 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RAB11FIP3 | NM_014700.3 | NP_055515.1 | ||
XM_005255713.3 | XP_005255770.1 | |||
XM_005255717.3 | XP_005255774.1 | |||
XM_005255718.3 | XP_005255775.1 | |||
XM_017023907.1 | XP_016879396.1 | |||
AB014565.1 | ||||
AF395731.1 | AAL12940.1 | |||
BC051360.1 | AAH51360.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv521610 | Chr.16:430096 - 445538 on Build GRCh38 | Gain | RAB11FIP3 |
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | MAPK8IP3 MIR4516 PDPK1 EME2 LMF1 CACNA1H MIR662 C16orf91 NPRL3 KCTD5 PRR25 HS3ST6 TPSAB1 FLJ42627 WDR24 ZNF598 PDIA2 TPSB2 RPS2 MIR5587 BAIAP3 DECR2 MSRB1 IFT140 LOC105371184 MRPS34 WFIKKN1 RGS11 LOC652276 ATP6V0C NTHL1 LOC105371038 HBA1 ARHGDIG SNORA10 RHBDF1 DDX11L10 RPUSD1 NTN3 HN1L UNKL UBE2I CCDC78 RAB11FIP3 PRR35 MIR4717 TPSG1 RHOT2 TMEM204 LOC105371046 WDR90 SNRNP25 HBZ NHLRC4 MPG RAB40C SNORA64 BRICD5 LOC729652 TBC1D24 LOC105371045 MIR6767 NOXO1 CHTF18 LOC106660606 TRAF7 RPL3L ABCA3 MIR1225 LOC100287175 CLCN7 MRPL28 E4F1 MIR3178 SNHG9 LOC100134368 HBA2 SPSB3 SYNGR3 C16orf59 SSTR5 PTX4 MIR6859-4 MIR3677 RAB26 CAPN15 MEIOB ABCA17P GFER METTL26 SOX8 GNG13 FAM234A MLST8 TMEM8A SSTR5-AS1 SNHG19 PRSS27 HAGH SLC9A3R2 NME4 LOC105371049 MIR940 FAM173A PKD1 IGFALS C1QTNF8 CCDC154 TSR3 STUB1 NUBP2 CASKIN1 MIR6511B1 NME3 MSLN NDUFB10 RPL23AP5 NPW LUC7L HAGHL MIR3177 METRN LINC00235 CCNF PIGQ LOC105371047 MIR3176 CRAMP1 RNPS1 PRSS29P MCRIP2 TELO2 LMF1-AS1 DNASE1L2 JMJD8 ERVK13-1 FAHD1 LOC107987233 HBQ1 AXIN1 PGP CEMP1 SNORA78 WASIR2 TSC2 TPSD1 SNORD60 HBM FBXL16 LINC00254 AMDHD2 POLR3K RNF151 RHBDL1 LOC101929280 MIR3180-5 NARFL LOC107984876 MIR6768 ECI1 GNPTG TBL3 |
dgv4810n54 | Chr.16:380011 - 445662 on Build GRCh38 | Loss | LOC100134368 NME4 RPL23AP5 TMEM8A RAB11FIP3 DECR2 |
esv3637576 | Chr.16:439034 - 480097 on Build GRCh38 | Gain | RAB11FIP3 |
esv3637563 | Chr.16:263248 - 505590 on Build GRCh38 | Gain | LOC100134368 NME4 FAM234A RGS11 RPL23AP5 TMEM8A MRPL28 AXIN1 PDIA2 RAB11FIP3 DECR2 ARHGDIG |
nsv570954 | Chr.16:342461 - 530124 on Build GRCh38 | Loss | LOC100134368 NME4 RPL23AP5 TMEM8A MRPL28 CAPN15 AXIN1 RAB11FIP3 LINC00235 DECR2 |
nsv457303 | Chr.16:383623 - 445662 on Build GRCh38 | Loss | LOC100134368 NME4 RPL23AP5 RAB11FIP3 DECR2 |
dgv4809n54 | Chr.16:322597 - 451362 on Build GRCh38 | Loss | LOC100134368 NME4 RPL23AP5 TMEM8A MRPL28 AXIN1 RAB11FIP3 DECR2 |
dgv32n68 | Chr.16:245507 - 476226 on Build GRCh38 | Loss | LOC100134368 NME4 FAM234A RGS11 RPL23AP5 TMEM8A MRPL28 AXIN1 PDIA2 RAB11FIP3 DECR2 ARHGDIG |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |