Hs03943726_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89875432 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	BI913551.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	ZNF276 LOC107984817 FANCA SPIRE2 TCF25 LOC105371419
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC107984817 FANCA SPIRE2 TCF25 LOC105371419
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	SPATA33 MC1R SPIRE2 CHMP1A LOC105371419 ZNF276 TUBB3 GAS8-AS1 DPEP1 LOC107984817 VPS9D1-AS1 VPS9D1 AFG3L1P GAS8 CDK10 FANCA DBNDD1 TCF25 DEF8 SPATA2L CENPBD1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	TUBB3 GAS8-AS1 MC1R AFG3L1P GAS8 SPIRE2 DBNDD1 TCF25 DEF8 CENPBD1
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	ANKRD11 CHMP1A LOC105371419 GAS8-AS1 SNORD68 LOC107984817 AFG3L1P TUBB8P7 CDK10 DBNDD1 TCF25 DEF8 SPATA2L FAM157C CPNE7 SPATA33 ZNF778 MC1R LOC100287036 SPIRE2 LOC101927817 URAHP LOC105371414 ZNF276 TUBB3 PRDM7 RPL13 DPEP1 VPS9D1-AS1 VPS9D1 GAS8 FANCA SPG7 CENPBD1
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	TUBB3 MC1R AFG3L1P GAS8 SPIRE2 DBNDD1 TCF25 DEF8 LOC105371419 CENPBD1
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	ANKRD11 LOC100289580 SLC22A31 LOC105371419 LOC107984817 SNAI3 AFG3L1P GALNS LOC400558 LOC339059 DEF8 CPNE7 SPATA33 PIEZO1 MC1R MIR4722 TRAPPC2L APRT RNF166 IL17C LOC105371414 ZNF276 MVD DPEP1 LOC100129697 LOC105371409 VPS9D1-AS1 GAS8 LINC00304 PABPN1L SNAI3-AS1 ACSF3 CHMP1A LOC101927793 LOC107987238 CTU2 GAS8-AS1 SNORD68 CDT1 CYBA TUBB8P7 CDK10 DBNDD1 TCF25 SPATA2L FAM157C ZNF778 LOC100287036 SPIRE2 LOC101927817 URAHP CBFA2T3 CDH15 TUBB3 PRDM7 RPL13 VPS9D1 FANCA SPG7 CENPBD1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding