Hs03941235_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89879026 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	BI913551.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	LOC107984817 FANCA LOC105371419 SPIRE2 ZNF276 TCF25
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	LOC107984817 FANCA LOC105371419 SPIRE2 TCF25
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	LOC107984817 CHMP1A VPS9D1-AS1 LOC105371419 SPIRE2 ZNF276 CENPBD1 TCF25 GAS8-AS1 DBNDD1 CDK10 GAS8 FANCA AFG3L1P TUBB3 DPEP1 SPATA33 DEF8 MC1R SPATA2L VPS9D1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	GAS8-AS1 DBNDD1 GAS8 AFG3L1P SPIRE2 TUBB3 CENPBD1 DEF8 MC1R TCF25
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	LOC100287036 CHMP1A ZNF276 SNORD68 FAM157C SPG7 CPNE7 LOC101927817 ANKRD11 GAS8-AS1 GAS8 FANCA TUBB8P7 ZNF778 DPEP1 LOC105371414 DEF8 LOC107984817 RPL13 VPS9D1-AS1 LOC105371419 SPIRE2 CENPBD1 PRDM7 TCF25 URAHP DBNDD1 CDK10 AFG3L1P TUBB3 SPATA33 MC1R SPATA2L VPS9D1
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	DBNDD1 GAS8 AFG3L1P LOC105371419 SPIRE2 TUBB3 CENPBD1 DEF8 MC1R TCF25
nsv9479	Chr.16:89878586 - 89880246 on Build GRCh38	Gain	TCF25
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC100287036 CHMP1A CTU2 LINC00304 SNAI3-AS1 LOC107987238 LOC400558 ANKRD11 RNF166 GAS8-AS1 LOC339059 TUBB8P7 SLC22A31 DPEP1 SNAI3 LOC100129697 ACSF3 LOC107984817 SPIRE2 PRDM7 LOC105371409 MIR4722 TCF25 PIEZO1 LOC100289580 CDK10 LOC101927793 AFG3L1P CDT1 TUBB3 MC1R SPATA2L MVD IL17C ZNF276 SNORD68 FAM157C SPG7 CPNE7 GALNS LOC101927817 GAS8 FANCA APRT CYBA ZNF778 PABPN1L LOC105371414 DEF8 TRAPPC2L CDH15 RPL13 VPS9D1-AS1 LOC105371419 CBFA2T3 CENPBD1 URAHP DBNDD1 SPATA33 VPS9D1

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding