Hs03931538_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89876181 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 2

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	BI913551.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	SPIRE2 ZNF276 TCF25 LOC107984817 LOC105371419 FANCA
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	SPIRE2 TCF25 LOC107984817 LOC105371419 FANCA
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	CHMP1A VPS9D1-AS1 DPEP1 SPIRE2 ZNF276 CENPBD1 DEF8 TCF25 CDK10 LOC107984817 LOC105371419 MC1R TUBB3 GAS8-AS1 AFG3L1P GAS8 VPS9D1 DBNDD1 SPATA33 FANCA SPATA2L
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	TUBB3 GAS8-AS1 AFG3L1P GAS8 DBNDD1 SPIRE2 CENPBD1 DEF8 TCF25 MC1R
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	CENPBD1 DEF8 CDK10 ZNF778 AFG3L1P LOC100287036 GAS8 ANKRD11 DBNDD1 FAM157C SPATA33 RPL13 FANCA SPATA2L CHMP1A PRDM7 LOC105371414 VPS9D1-AS1 DPEP1 LOC101927817 SNORD68 SPIRE2 ZNF276 TCF25 LOC107984817 LOC105371419 MC1R TUBB3 GAS8-AS1 CPNE7 SPG7 VPS9D1 TUBB8P7 URAHP
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	TUBB3 AFG3L1P GAS8 DBNDD1 SPIRE2 CENPBD1 DEF8 TCF25 LOC105371419 MC1R
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC101927793 CDK10 LOC100129697 SNAI3-AS1 ZNF778 PABPN1L LOC100287036 GAS8 ANKRD11 RPL13 LOC400558 CDH15 LOC105371414 VPS9D1-AS1 TRAPPC2L CBFA2T3 SNORD68 ACSF3 IL17C LOC107984817 LOC105371419 CDT1 CPNE7 VPS9D1 LOC100289580 RNF166 SLC22A31 CENPBD1 DEF8 MVD APRT LOC107987238 AFG3L1P DBNDD1 SNAI3 CYBA FAM157C SPATA33 MIR4722 FANCA SPATA2L CHMP1A PRDM7 PIEZO1 DPEP1 LOC101927817 SPIRE2 LOC105371409 ZNF276 CTU2 TCF25 LOC339059 MC1R TUBB3 GAS8-AS1 SPG7 TUBB8P7 LINC00304 URAHP GALNS

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding