Assay Details
Target Gene Details
Entrez Gene ID: | 9727 |
Gene Name: | RAB11 family interacting protein 3 |
Gene Aliases: |
CART1, Rab11-FIP3 |
Location: |
Chr.16:425621-522485 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
RAB11FIP3 | NM_014700.3 | NP_055515.1 | ||
XM_005255713.3 | XP_005255770.1 | |||
XM_005255717.3 | XP_005255774.1 | |||
XM_005255718.3 | XP_005255775.1 | |||
XM_017023907.1 | XP_016879396.1 | |||
AB014565.1 | ||||
AF395731.1 | AAL12940.1 | |||
BC051360.1 | AAH51360.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
esv2422427 | Chr.16:10001 - 2723164 on Build GRCh38 | Duplication | SNHG19 LOC105371049 WDR24 ARHGDIG LOC105371184 MIR6511B1 CHTF18 LOC105371046 FLJ42627 LINC00235 AMDHD2 SNRNP25 NHLRC4 HBA1 MIR940 RHBDF1 LOC100134368 CLCN7 SSTR5-AS1 SNHG9 LOC107984876 MEIOB RAB40C MIR3180-5 MIR3176 PGP BRICD5 ABCA3 TMEM8A RPS2 ERVK13-1 DDX11L10 ABCA17P MCRIP2 HAGH RAB26 PIGQ RNPS1 SNORA10 CRAMP1 MSRB1 GFER TELO2 LOC101929280 RGS11 HN1L HBM STUB1 HS3ST6 PKD1 GNG13 LOC729652 MIR6767 RHBDL1 RPL23AP5 IGFALS WDR90 PRSS29P TSC2 LMF1 RHOT2 CACNA1H NPRL3 UBE2I PRR35 NME3 E4F1 CCNF POLR3K MRPL28 NPW MPG LOC106660606 ZNF598 NTN3 TBL3 WASIR2 FAHD1 C1QTNF8 MIR1225 HBA2 TRAF7 HBZ NTHL1 HBQ1 RNF151 MIR6768 HAGHL C16orf59 BAIAP3 CEMP1 MIR6859-4 LOC105371038 SSTR5 LMF1-AS1 ATP6V0C MLST8 SNORD60 DNASE1L2 CCDC154 TPSG1 RAB11FIP3 C16orf91 PDIA2 CCDC78 NOXO1 LINC00254 UNKL PRSS27 TMEM204 LOC105371047 SNORA78 SYNGR3 MIR4717 GNPTG MAPK8IP3 SPSB3 AXIN1 TPSB2 NDUFB10 FBXL16 TBC1D24 NARFL LOC105371045 SNORA64 PTX4 NME4 METTL26 LOC107987233 MIR3677 TPSD1 EME2 LUC7L LOC652276 CAPN15 MRPS34 PRR25 FAM234A METRN KCTD5 SLC9A3R2 FAM173A LOC100287175 NUBP2 RPL3L MIR4516 JMJD8 TPSAB1 DECR2 MIR3178 MIR3177 PDPK1 RPUSD1 SOX8 MIR662 WFIKKN1 CASKIN1 ECI1 MIR5587 TSR3 MSLN IFT140 |
dgv4810n54 | Chr.16:380011 - 445662 on Build GRCh38 | Loss | DECR2 RAB11FIP3 LOC100134368 NME4 RPL23AP5 TMEM8A |
nsv9320 | Chr.16:427245 - 432556 on Build GRCh38 | Loss | RAB11FIP3 |
esv3637563 | Chr.16:263248 - 505590 on Build GRCh38 | Gain | DECR2 RAB11FIP3 PDIA2 ARHGDIG LOC100134368 NME4 RPL23AP5 RGS11 AXIN1 TMEM8A MRPL28 FAM234A |
esv3637574 | Chr.16:427856 - 430795 on Build GRCh38 | Loss | RAB11FIP3 |
nsv570956 | Chr.16:376432 - 437728 on Build GRCh38 | Gain | DECR2 RAB11FIP3 LOC100134368 NME4 RPL23AP5 TMEM8A |
nsv570954 | Chr.16:342461 - 530124 on Build GRCh38 | Loss | DECR2 RAB11FIP3 LOC100134368 NME4 CAPN15 RPL23AP5 AXIN1 TMEM8A MRPL28 LINC00235 |
nsv457303 | Chr.16:383623 - 445662 on Build GRCh38 | Loss | DECR2 RAB11FIP3 LOC100134368 NME4 RPL23AP5 |
dgv4809n54 | Chr.16:322597 - 451362 on Build GRCh38 | Loss | DECR2 RAB11FIP3 LOC100134368 NME4 RPL23AP5 AXIN1 TMEM8A MRPL28 |
esv2660167 | Chr.16:427853 - 430781 on Build GRCh38 | Deletion | RAB11FIP3 |
dgv32n68 | Chr.16:245507 - 476226 on Build GRCh38 | Loss | DECR2 RAB11FIP3 PDIA2 ARHGDIG LOC100134368 NME4 RPL23AP5 RGS11 AXIN1 TMEM8A MRPL28 FAM234A |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |