Hs03929674_cn

• Gene Symbol: TCF25
• Assay Reference Genome Location: Chr.16:89881066 on build GRCh38
• Cytoband: 16q24.3

Target Gene Details

• Entrez Gene ID: 22980
• Gene Name: transcription factor 25
• Gene Aliases: FKSG26, Hulp1, NULP1, PRO2620, hKIAA1049
• Location: Chr.16:89873583-89911384 on Build GRCh38
• Assay Gene Location: Within Intron 3

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
TCF25	NM_014972.2			NP_055787.1
	XM_005256297.2			XP_005256354.1
	XM_005256298.2			XP_005256355.1
	XM_005256299.2			XP_005256356.1
	XM_011522956.2			XP_011521258.1
	XM_011522957.2			XP_011521259.1
	XM_011522958.2			XP_011521260.1
	XM_011522959.2			XP_011521261.1
	XM_011522960.2			XP_011521262.1
	XM_011522961.2			XP_011521263.1
	XM_017023047.1			XP_016878536.1
	XM_017023048.1			XP_016878537.1
	XM_017023049.1			XP_016878538.1
	XM_017023050.1			XP_016878539.1
	XM_017023051.1			XP_016878540.1
	XM_017023052.1			XP_016878541.1
	XM_017023053.1			XP_016878542.1
	XM_017023054.1			XP_016878543.1
	XM_017023055.1			XP_016878544.1
	XM_017023056.1			XP_016878545.1
	XM_017023057.1			XP_016878546.1
	XM_017023058.1			XP_016878547.1
	AF322111.1			AAG50276.1
	AK024679.1			BAB14959.1
	AK301053.1
	BC000959.1			AAH00959.1
	BC009349.2			AAH09349.1
	BC011884.2			AAH11884.1
	BI913551.1
	DQ321703.1			ABC55265.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
nsv573744	Chr.16:89738447 - 89915950 on Build GRCh38	Loss	TCF25 LOC105371419 LOC107984817 FANCA SPIRE2 ZNF276
esv2758671	Chr.16:89804324 - 89901541 on Build GRCh38	Loss	TCF25 LOC105371419 LOC107984817 FANCA SPIRE2
esv2762221	Chr.16:89610380 - 90039318 on Build GRCh38	Gain+Loss	CENPBD1 CHMP1A TCF25 LOC105371419 GAS8 AFG3L1P CDK10 DBNDD1 TUBB3 ZNF276 SPATA2L VPS9D1 SPATA33 DPEP1 MC1R DEF8 LOC107984817 VPS9D1-AS1 FANCA SPIRE2 GAS8-AS1
nsv573810	Chr.16:89857498 - 90037251 on Build GRCh38	Loss	CENPBD1 TCF25 MC1R DEF8 GAS8 AFG3L1P DBNDD1 SPIRE2 TUBB3 GAS8-AS1
nsv428331	Chr.16:89216635 - 90185980 on Build GRCh38	Gain+Loss	CENPBD1 CHMP1A GAS8 CDK10 LOC100287036 URAHP SPATA2L SNORD68 SPATA33 MC1R FAM157C ZNF778 DEF8 SPG7 LOC101927817 SPIRE2 LOC105371414 TCF25 RPL13 LOC105371419 AFG3L1P DBNDD1 TUBB3 ZNF276 PRDM7 ANKRD11 VPS9D1 DPEP1 TUBB8P7 LOC107984817 VPS9D1-AS1 CPNE7 FANCA GAS8-AS1
nsv573799	Chr.16:89852186 - 90022379 on Build GRCh38	Gain	CENPBD1 TCF25 MC1R LOC105371419 DEF8 GAS8 AFG3L1P DBNDD1 SPIRE2 TUBB3
nsv482951	Chr.16:88633593 - 90228345 on Build GRCh38	Loss	LOC100289580 SNAI3-AS1 TRAPPC2L MIR4722 CDK10 APRT LOC100287036 SPATA33 LOC101927793 MC1R DEF8 SPG7 SNAI3 GALNS ACSF3 DBNDD1 MVD TUBB3 PRDM7 LOC339059 ANKRD11 LINC00304 DPEP1 LOC100129697 LOC105371409 SLC22A31 CPNE7 LOC107987238 IL17C CDH15 GAS8-AS1 CENPBD1 CHMP1A CYBA GAS8 PIEZO1 URAHP SPATA2L LOC400558 SNORD68 FAM157C ZNF778 LOC101927817 SPIRE2 LOC105371414 TCF25 RPL13 LOC105371419 CBFA2T3 PABPN1L AFG3L1P CDT1 ZNF276 VPS9D1 RNF166 TUBB8P7 CTU2 LOC107984817 VPS9D1-AS1 FANCA

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
heart development

Function(s)

DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding