Assay Details
Target Gene Details
Entrez Gene ID: | 101059906 |
Gene Name: | collagen alpha-2(IV) chain-like |
Gene Aliases: |
- |
Location: |
Chr.11:528484-532263 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LOC101059906 | XM_003959933.4 | XP_003959982.2 |
Target Gene Details
Entrez Gene ID: | 115399 |
Gene Name: | leucine rich repeat containing 56 |
Gene Aliases: |
- |
Location: |
Chr.11:518967-554916 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LRRC56 | XM_011519875.2 | XP_011518177.1 | ||
XM_011519877.2 | XP_011518179.1 | |||
XM_017017167.1 | XP_016872656.1 | |||
XM_017017168.1 | XP_016872657.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv467634 | Chr.11:511805 - 619789 on Build GRCh38 | Loss |
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nsv527327 | Chr.11:295343 - 620599 on Build GRCh38 | Loss |
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nsv951270 | Chr.11:528401 - 628100 on Build GRCh38 | Deletion |
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nsv469923 | Chr.11:378188 - 1302334 on Build GRCh38 | Loss |
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
esv2759794 | Chr.11:409846 - 1336162 on Build GRCh38 | Loss |
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
esv33673 | Chr.11:528525 - 530251 on Build GRCh38 | Gain |
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esv3366265 | Chr.11:528252 - 531250 on Build GRCh38 | Duplication |
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nsv1053964 | Chr.11:491334 - 692433 on Build GRCh38 | Gain |
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dgv182e199 | Chr.11:349830 - 943372 on Build GRCh38 | Deletion |
![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() ![]() |
nsv1159791 | Chr.11:461793 - 909492 on Build GRCh38 | Deletion |
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![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)
More Information
Additional Information:
For this assay, SNP(s) [rs115456410] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
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Panther Classification:
![](/order/genome-database/details/genotyping/assets/img/arrow_icon_up_black.png)