Assay Details
Target Gene Details
Entrez Gene ID: | 89958 |
Gene Name: | suppressor APC domain containing 2 |
Gene Aliases: |
C9orf140, p42.3 |
Location: |
Chr.9:137062127-137070576 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SAPCD2 | NM_178448.3 | NP_848543.2 | ||
XM_011519180.2 | XP_011517482.1 | |||
BC048267.1 | AAH48267.1 | |||
BX332104.2 | ||||
DQ150361.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
dgv13007n54 | Chr.9:136966179 - 137173890 on Build GRCh38 | Loss | SAPCD2 MAN1B1 NPDC1 FUT7 ABCA2 C9orf139 MIR3621 LRRC26 C9orf142 GRIN1 LOC101930307 ENTPD2 UAP1L1 MAN1B1-AS1 TMEM210 CLIC3 PTGDS PRR31 LCNL1 DPP7 |
nsv831761 | Chr.9:137049674 - 137166473 on Build GRCh38 | Loss | LOC101930307 SAPCD2 MAN1B1 ENTPD2 UAP1L1 MAN1B1-AS1 DPP7 GRIN1 |
nsv616006 | Chr.9:137057859 - 137083633 on Build GRCh38 | Loss | SAPCD2 UAP1L1 |
nsv524322 | Chr.9:136795692 - 137482216 on Build GRCh38 | Loss | MAN1B1 EDF1 NELFB ABCA2 FBXW5 PHPT1 MIR7114 C9orf139 LRRC26 LOC101930307 RNF208 CYSRT1 PNPLA7 NDOR1 FAM166A MAN1B1-AS1 NOXA1 CCDC183 TUBB4B NRARP C9orf173-AS1 TMEM203 MIR4479 MAMDC4 FUT7 C9orf172 C9orf142 GRIN1 RNF224 ENTPD2 LCN12 SSNA1 TMEM210 CLIC3 LCNL1 DPP7 SAPCD2 ENTPD8 MIR4292 TPRN NPDC1 MIR3621 CCDC183-AS1 EXD3 NSMF C8G STPG3 SLC34A3 ANAPC2 UAP1L1 TRAF2 PTGDS PRR31 TOR4A RABL6 |
nsv951206 | Chr.9:136944849 - 137114548 on Build GRCh38 | Deletion | SAPCD2 MAN1B1 NPDC1 FUT7 ABCA2 C9orf139 C9orf142 LOC101930307 ENTPD2 LCN12 UAP1L1 MAN1B1-AS1 CLIC3 PTGDS PRR31 LCNL1 C8G DPP7 |
nsv469918 | Chr.9:136359865 - 137173890 on Build GRCh38 | Loss | MAN1B1 NOTCH1 SNORA17B SDCCAG3 EDF1 MIR4673 ABCA2 FBXW5 PHPT1 TMEM141 C9orf139 LRRC26 LOC101930307 MAN1B1-AS1 CCDC183 EGFL7 FAM69B LCN10 SNHG7 INPP5E AGPAT2 MIR4479 PMPCA MAMDC4 SNAPC4 FUT7 MIR126 C9orf172 LOC100128593 C9orf142 GRIN1 ENTPD2 LCN12 TMEM210 CLIC3 NALT1 LCNL1 DPP7 SAPCD2 MIR4292 MIR6722 NPDC1 MIR3621 C9orf163 MIR4674 HSPC324 CCDC183-AS1 C8G CARD9 DNLZ SNORA17A LCN15 LCN6 UAP1L1 TRAF2 LCN8 SEC16A PTGDS PRR31 LINC01451 RABL6 |
nsv616005 | Chr.9:137036493 - 137173890 on Build GRCh38 | Loss | SAPCD2 MAN1B1 NPDC1 C9orf139 MIR3621 LRRC26 GRIN1 LOC101930307 ENTPD2 UAP1L1 MAN1B1-AS1 TMEM210 DPP7 |
esv2761561 | Chr.9:137030185 - 137191593 on Build GRCh38 | Gain | SAPCD2 MAN1B1 NPDC1 FUT7 C9orf139 MIR3621 LRRC26 GRIN1 LOC101930307 ENTPD2 ANAPC2 UAP1L1 SSNA1 MAN1B1-AS1 TMEM210 DPP7 |
esv2422220 | Chr.9:136584135 - 137350098 on Build GRCh38 | Deletion | MAN1B1 SNORA17B EDF1 NELFB ABCA2 FBXW5 PHPT1 TMEM141 C9orf139 LRRC26 LOC101930307 RNF208 CYSRT1 NDOR1 FAM166A MAN1B1-AS1 CCDC183 EGFL7 TUBB4B FAM69B NRARP LCN10 SNHG7 C9orf173-AS1 TMEM203 AGPAT2 MIR4479 MAMDC4 FUT7 MIR126 C9orf172 LOC100128593 C9orf142 GRIN1 RNF224 ENTPD2 LCN12 SSNA1 TMEM210 CLIC3 LCNL1 DPP7 SAPCD2 MIR4292 TPRN MIR6722 NPDC1 MIR3621 HSPC324 CCDC183-AS1 EXD3 C8G STPG3 SLC34A3 SNORA17A LCN15 LCN6 ANAPC2 UAP1L1 TRAF2 LCN8 PTGDS PRR31 LINC01451 TOR4A RABL6 |
nsv982354 | Chr.9:137057355 - 137073859 on Build GRCh38 | Duplication | SAPCD2 |