Assay Details
Target Gene Details
Entrez Gene ID: | 5730 |
Gene Name: | prostaglandin D2 synthase |
Gene Aliases: |
L-PGDS, LPGDS, PDS, PGD2, PGDS, PGDS2 |
Location: |
Chr.9:136977504-136981742 on Build GRCh38 |
Assay Gene Location: | Within Intron 6 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
PTGDS | NM_000954.5 | NP_000945.3 | ||
AA621632.1 | ||||
AI659247.1 | ||||
AK075333.1 | ||||
BC005939.1 | AAH05939.1 | |||
BG037037.1 | ||||
BM686612.1 | ||||
M61900.2 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv615997 | Chr.9:136977199 - 136984376 on Build GRCh38 | Loss | LCNL1 PTGDS |
nsv615991 | Chr.9:136972675 - 137011907 on Build GRCh38 | Loss | PRR31 LCNL1 C9orf142 ABCA2 CLIC3 PTGDS |
dgv13007n54 | Chr.9:136966179 - 137173890 on Build GRCh38 | Loss | PRR31 LOC101930307 TMEM210 PTGDS LRRC26 GRIN1 LCNL1 C9orf142 MAN1B1-AS1 MIR3621 ABCA2 SAPCD2 FUT7 NPDC1 CLIC3 ENTPD2 DPP7 UAP1L1 C9orf139 MAN1B1 |
nsv615993 | Chr.9:136975638 - 136983246 on Build GRCh38 | Gain | LCNL1 PTGDS |
nsv818738 | Chr.9:136740043 - 137009585 on Build GRCh38 | Gain | MIR6722 PTGDS C8G LCN10 FBXW5 MIR4479 LCNL1 C9orf172 MIR4292 ABCA2 RABL6 LCN15 PRR31 MAMDC4 CCDC183-AS1 TMEM141 PHPT1 C9orf142 CCDC183 LCN12 LCN6 LCN8 CLIC3 LOC100128593 EDF1 TRAF2 |
nsv524322 | Chr.9:136795692 - 137482216 on Build GRCh38 | Loss | ENTPD8 LOC101930307 PTGDS C8G MIR4479 C9orf173-AS1 LCNL1 C9orf172 MIR4292 MIR3621 ABCA2 SAPCD2 RABL6 TUBB4B CYSRT1 DPP7 MIR7114 NDOR1 NRARP GRIN1 PHPT1 C9orf142 MAN1B1-AS1 TOR4A CCDC183 LCN12 FUT7 NPDC1 EXD3 ENTPD2 UAP1L1 C9orf139 RNF224 TMEM210 FBXW5 NSMF RNF208 ANAPC2 SLC34A3 PRR31 MAMDC4 SSNA1 NOXA1 CCDC183-AS1 FAM166A LRRC26 TMEM203 PNPLA7 NELFB STPG3 TPRN CLIC3 MAN1B1 EDF1 TRAF2 |
nsv951206 | Chr.9:136944849 - 137114548 on Build GRCh38 | Deletion | PRR31 LOC101930307 PTGDS C8G LCNL1 C9orf142 MAN1B1-AS1 LCN12 ABCA2 SAPCD2 FUT7 NPDC1 CLIC3 ENTPD2 DPP7 UAP1L1 C9orf139 MAN1B1 |
nsv469918 | Chr.9:136359865 - 137173890 on Build GRCh38 | Loss | MIR4674 SNORA17B LOC101930307 PTGDS C8G LCN10 FAM69B MIR4479 LCNL1 C9orf172 CARD9 MIR4292 MIR3621 ABCA2 SAPCD2 RABL6 DPP7 NOTCH1 LCN15 INPP5E SNAPC4 C9orf163 SEC16A HSPC324 SNHG7 GRIN1 PHPT1 C9orf142 MAN1B1-AS1 CCDC183 LCN12 NALT1 LCN6 FUT7 NPDC1 ENTPD2 LOC100128593 UAP1L1 C9orf139 EGFL7 AGPAT2 PMPCA SDCCAG3 MIR6722 TMEM210 FBXW5 DNLZ MIR126 PRR31 SNORA17A MIR4673 MAMDC4 CCDC183-AS1 TMEM141 LRRC26 LINC01451 LCN8 CLIC3 MAN1B1 EDF1 TRAF2 |
esv2422220 | Chr.9:136584135 - 137350098 on Build GRCh38 | Deletion | SNORA17B LOC101930307 PTGDS C8G LCN10 FAM69B MIR4479 C9orf173-AS1 LCNL1 C9orf172 MIR4292 MIR3621 ABCA2 SAPCD2 RABL6 TUBB4B CYSRT1 DPP7 LCN15 NDOR1 HSPC324 NRARP SNHG7 GRIN1 PHPT1 C9orf142 MAN1B1-AS1 TOR4A CCDC183 LCN12 LCN6 FUT7 NPDC1 EXD3 ENTPD2 LOC100128593 UAP1L1 C9orf139 EGFL7 RNF224 AGPAT2 MIR6722 TMEM210 FBXW5 RNF208 MIR126 ANAPC2 SLC34A3 PRR31 SNORA17A MAMDC4 SSNA1 CCDC183-AS1 FAM166A TMEM141 LRRC26 TMEM203 NELFB STPG3 LINC01451 LCN8 TPRN CLIC3 MAN1B1 EDF1 TRAF2 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |