Assay Details
Target Gene Details
Entrez Gene ID: | 57128 |
Gene Name: | LYR motif containing 4 |
Gene Aliases: |
C6orf149, CGI-203, COXPD19, ISD11 |
Location: |
Chr.6:5031029-5260950 on Build GRCh38 |
Assay Gene Location: | Within Intron 12 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LYRM4 | XM_017011084.1 | XP_016866573.1 |
Target Gene Details
Entrez Gene ID: | 100129461 |
Gene Name: | LYRM4 antisense RNA 1 |
Gene Aliases: |
- |
Location: |
Chr.6:5003816-5240496 on Build GRCh38 |
Assay Gene Location: | Within Intron 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
LYRM4-AS1 | NR_126015.1 | |||
NR_126016.1 | ||||
NR_126017.1 | ||||
NR_126018.1 | ||||
NR_126019.1 | ||||
AK094934.1 | ||||
BE788607.1 | ||||
CR736828.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv950765 | Chr.6:5034967 - 5038866 on Build GRCh38 | Deletion | LYRM4-AS1 LYRM4 |
nsv462622 | Chr.6:4904146 - 5171775 on Build GRCh38 | Gain | CDYL RPP40 LYRM4-AS1 LYRM4 MIR3691 PPP1R3G |
nsv1033905 | Chr.6:4955592 - 5080670 on Build GRCh38 | Gain | RPP40 LYRM4-AS1 LYRM4 |
nsv600872 | Chr.6:4975079 - 5341957 on Build GRCh38 | Gain | RPP40 LYRM4-AS1 LYRM4 FARS2 MIR3691 PPP1R3G |
nsv1017380 | Chr.6:5007636 - 5152317 on Build GRCh38 | Gain | LYRM4-AS1 LYRM4 MIR3691 PPP1R3G |
nsv830577 | Chr.6:4834333 - 5050310 on Build GRCh38 | Loss | CDYL RPP40 LYRM4-AS1 LYRM4 |
esv2548026 | Chr.6:5036613 - 5039748 on Build GRCh38 | Deletion | LYRM4-AS1 LYRM4 |
esv2422499 | Chr.6:4745194 - 5072988 on Build GRCh38 | Duplication | CDYL RPP40 LYRM4-AS1 LYRM4 |
More Information
Additional Information:
For this assay, SNP(s) [rs73365175] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |