Hs03523039_cn

• Gene Symbol: PTPN13
• Assay Reference Genome Location: Chr.4:86625103 on build GRCh38
• Cytoband: 4q21.3

Target Gene Details

• Entrez Gene ID: 5783
• Gene Name: protein tyrosine phosphatase, non-receptor type 13
• Gene Aliases: FAP-1, PNP1, PTP-BAS, PTP-BL, PTP1E, PTPL1, PTPLE, hPTP1E
• Location: Chr.4:86594307-86815179 on Build GRCh38
• Assay Gene Location: Within Intron 1

Gene Symbol	Transcript Accession	Exon Location	Assay Transcript Location	Protein ID
PTPN13	NM_006264.2			NP_006255.1
	NM_080683.2			NP_542414.1
	NM_080684.2			NP_542415.1
	NM_080685.2			NP_542416.1
	XM_011532165.1			XP_011530467.1
	XM_017008511.1			XP_016864000.1
	XM_017008512.1			XP_016864001.1
	XM_017008513.1			XP_016864002.1
	XM_017008514.1			XP_016864003.1
	XM_017008515.1			XP_016864004.1
	XM_017008516.1			XP_016864005.1
	AK056151.1
	D21209.1			BAA04750.1
	D21210.1			BAA04751.1
	D21211.1			BAA04752.1
	DA625835.1
	X80289.1			CAA56563.1

Target Copy Number Variation Details

• DGV Version: Release date: 2016-05-15, GRCh GRCh38

Target Variation	Location	CNV Subtype	Genes
esv2759264	Chr.4:86496138 - 86768380 on Build GRCh38	Loss	MIR4452 PTPN13 MAPK10
nsv594786	Chr.4:86155207 - 86688167 on Build GRCh38	Gain	LOC101929064 MIR4452 PTPN13 MAPK10
esv3601259	Chr.4:86625025 - 86702001 on Build GRCh38	Loss	PTPN13
esv3601258	Chr.4:86558468 - 86701058 on Build GRCh38	Loss	PTPN13 MAPK10
nsv822635	Chr.4:86558423 - 86701023 on Build GRCh38	Loss	PTPN13 MAPK10
nsv594787	Chr.4:86300674 - 86967515 on Build GRCh38	Gain	LOC100506746 SLC10A6 MIR4452 C4orf36 PTPN13 AFF1 MAPK10

More Information

• Set Membership: Intragenic, Intronic, Non-exonic, DGV Variation

Panther Classification:

Molecular Function -

protein phosphatase

Gene Ontology Categories:

Process(es)

protein dephosphorylation
regulation of phosphatidylinositol 3-kinase signaling
peptidyl-tyrosine dephosphorylation

Function(s)

protein tyrosine phosphatase activity
protein binding
phosphatidylinositol 3-kinase regulatory subunit binding