Genomic Map
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Target Gene Details
Entrez Gene ID: | 10217 |
Gene Name: | CTD small phosphatase like |
Gene Aliases: |
C3orf8, HYA22, PSR1, RBSP3, SCP3 |
Location: |
Chr.3:37862152-37984469 on Build GRCh38 |
Assay Gene Location: | Within Intron 1 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| CTDSPL | NM_001008392.1 | NP_001008393.1 | ||
| NM_005808.2 | NP_005799.2 | |||
| XM_017005519.1 | XP_016861008.1 | |||
| AI143812.1 | ||||
| AI192993.1 | ||||
| AJ575644.1 | CAE11804.1 | |||
| AJ575645.1 | CAE11805.1 | |||
| AY279532.1 | AAP34400.1 | |||
| AY364238.1 | AAQ76797.1 | |||
| D88153.1 | BAA21667.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv522422 | Chr.3:37873431 - 37898917 on Build GRCh38 | Loss |
 CTDSPL
|
| nsv834666 | Chr.3:37705337 - 37887017 on Build GRCh38 | Gain+Loss |
CTDSPL
ITGA9-AS1
ITGA9
|
| esv2759140 | Chr.3:37789992 - 38062733 on Build GRCh38 | Loss |
PLCD1
CTDSPL
ITGA9-AS1
DLEC1
MIR26A1
VILL
ITGA9
|
| nsv1160928 | Chr.3:37742341 - 37907632 on Build GRCh38 | Duplication |
CTDSPL
ITGA9-AS1
ITGA9
|
| nsv428416 | Chr.3:37864474 - 38062733 on Build GRCh38 | Loss |
PLCD1
CTDSPL
DLEC1
MIR26A1
VILL
|
| esv3595895 | Chr.3:37668483 - 37876957 on Build GRCh38 | Gain |
CTDSPL
ITGA9-AS1
ITGA9
|
| esv3595887 | Chr.3:37319289 - 37878005 on Build GRCh38 | Gain |
CTDSPL
C3orf35
ITGA9-AS1
GOLGA4
ITGA9
|
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Additional Information:
For this assay, SNP(s) [rs114408949] are located under a primer or probe sequence. To help evaluate the possible impact of a given SNP on your experiment, please refer to the 1000 Genomes and NCBI dbSNP databases. A higher minor allele frequency in your study population represents a higher risk to assay performance.
Set Membership: |
Intragenic
Intronic
Non-exonic
DGV Variation
|
Gene Ontology Categories:
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