Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | TMEM88B SSU72 LOC107985729 VWA1 ATAD3C ATAD3B LOC102724312 TMEM240 ANKRD65 ATAD3A |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LINC00115 C1orf159 MIR6726 KLHL17 CDK11B NOC2L CPSF3L AGRN SDF4 FAM132A LOC107985728 MIR429 ATAD3B TNFRSF4 LOC102724312 LINC01342 DVL1 LOC100287934 PLEKHN1 LOC148413 LOC107985729 MIR200B UBE2J2 SAMD11 ANKRD65 LOC284600 RNF223 MRPL20 TMEM240 MMP23B MXRA8 FNDC10 LOC100130417 SLC35E2B LINC01128 MIR200A SCNN1D B3GALT6 SSU72 MIR6808 PUSL1 ACAP3 VWA1 MMP23A MIB2 TTLL10-AS1 TAS1R3 CPTP CDK11A FAM41C LOC105378948 AURKAIP1 TMEM88B SLC35E2 LOC100288175 PERM1 ATAD3A LOC100288069 TNFRSF18 CCNL2 TTLL10 NADK MIR6727 ATAD3C HES4 ISG15 FAM87B |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | C1orf159 MIR6726 CDK11B MIR429 ATAD3B TNFRSF4 LINC01342 LOC148413 MIR200B UBE2J2 LOC101928626 RNF223 LOC105378949 TMEM240 DDX11L1 MXRA8 FNDC10 LOC105378592 SCNN1D SSU72 GNB1 ACAP3 MMP23A LOC100506504 GABRD LOC100132287 TAS1R3 CPTP CDK11A MIR6859-2 PRKCZ LOC105378948 FAM138A TMEM88B LOC100134822 PERM1 ATAD3A LOC100288069 LOC729737 LOC107984841 TNFRSF18 LOC105378947 CCNL2 ISG15 FAM87B LINC00115 KLHL17 WASH7P NOC2L MIR6723 CPSF3L AGRN SDF4 FAAP20 MORN1 FAM132A LOC107985728 LOC102724312 DVL1 LOC100287934 LOC100133331 PLEKHN1 MTND1P23 LOC107985729 SAMD11 ANKRD65 MTND2P28 LOC284600 CFAP74 MRPL20 MMP23B LOC100130417 SLC35E2B LINC01128 MIR200A B3GALT6 MIR6808 PUSL1 VWA1 LOC100129534 LOC105378589 MIR1302-2 MIB2 TTLL10-AS1 LOC105378591 OR4F29 TMEM52 FAM41C OR4F16 AURKAIP1 SKI CALML6 OR4F5 SLC35E2 LOC100288175 MIR6859-1 LOC102725121 TTLL10 NADK MIR6727 ATAD3C HES4 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | SSU72 MIR6808 C1orf159 PUSL1 MIR6726 ACAP3 VWA1 CDK11B CPSF3L SDF4 MIB2 FAM132A TTLL10-AS1 MIR429 ATAD3B TAS1R3 TNFRSF4 LOC102724312 LINC01342 DVL1 CPTP LOC148413 LOC107985729 MIR200B AURKAIP1 UBE2J2 ANKRD65 TMEM88B MRPL20 TMEM240 ATAD3A MMP23B MXRA8 FNDC10 TNFRSF18 CCNL2 TTLL10 MIR6727 ATAD3C MIR200A SCNN1D B3GALT6 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | TMEM88B SSU72 VWA1 ATAD3B MRPL20 LOC102724312 TMEM240 ATAD3A LOC148413 LOC107985729 CCNL2 ATAD3C ANKRD65 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | SSU72 GNB1 VWA1 CDK11B MMP23A LOC105378589 GABRD MIB2 ATAD3B LOC102724312 LOC105378591 LOC148413 LOC107985729 CDK11A TMEM52 PRKCZ CALML6 ANKRD65 TMEM88B CFAP74 SLC35E2 LOC105378949 MRPL20 TMEM240 ATAD3A MMP23B FNDC10 CCNL2 SLC35E2B NADK ATAD3C |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |