Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | LOC107985729 ATAD3B VWA1 TMEM88B TMEM240 SSU72 ATAD3A ANKRD65 LOC102724312 ATAD3C |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | ATAD3B FAM41C AGRN TMEM88B MMP23A LINC01128 AURKAIP1 FAM132A ACAP3 HES4 LINC00115 LOC107985729 KLHL17 CDK11B LOC100130417 CCNL2 TAS1R3 MIR6727 ISG15 LOC102724312 MIB2 MIR6726 MIR429 LOC284600 DVL1 LINC01342 CPTP PERM1 CPSF3L SAMD11 LOC100288069 B3GALT6 MRPL20 SSU72 RNF223 SCNN1D MMP23B NADK LOC100287934 FNDC10 SLC35E2 TNFRSF18 PLEKHN1 C1orf159 ANKRD65 TTLL10-AS1 SDF4 ATAD3C NOC2L SLC35E2B TMEM240 MXRA8 CDK11A FAM87B PUSL1 UBE2J2 MIR200B LOC105378948 VWA1 ATAD3A MIR6808 TNFRSF4 LOC148413 MIR200A LOC107985728 LOC100288175 TTLL10 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | FAM41C TMEM88B AURKAIP1 LOC105378947 ACAP3 HES4 LINC00115 LOC107985729 KLHL17 CDK11B DDX11L1 MIR6859-2 CALML6 LOC100134822 ISG15 LOC284600 MTND1P23 DVL1 LOC100132287 LINC01342 CPTP CPSF3L LOC100133331 GABRD MRPL20 LOC105378589 SCNN1D MMP23B NADK LOC100287934 PLEKHN1 C1orf159 ANKRD65 NOC2L MTND2P28 SLC35E2B TMEM240 CDK11A WASH7P FAM87B UBE2J2 OR4F29 ATAD3A LOC102725121 MIR6808 TNFRSF4 LOC148413 GNB1 ATAD3B AGRN MORN1 MMP23A LINC01128 LOC101928626 FAM132A LOC729737 MIR1302-2 LOC100130417 CCNL2 SKI TAS1R3 OR4F16 MIR6727 LOC102724312 MIB2 MIR6726 MIR429 OR4F5 PRKCZ PERM1 SAMD11 LOC100288069 B3GALT6 SSU72 FAAP20 RNF223 MIR6859-1 FNDC10 SLC35E2 TNFRSF18 CFAP74 LOC105378591 TTLL10-AS1 SDF4 ATAD3C MXRA8 LOC105378592 PUSL1 LOC105378949 MIR200B LOC105378948 VWA1 MIR6723 LOC100506504 MIR200A LOC107984841 TMEM52 LOC107985728 LOC100129534 LOC100288175 TTLL10 FAM138A |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | ATAD3B TNFRSF18 TMEM88B C1orf159 ANKRD65 AURKAIP1 TTLL10-AS1 FAM132A ACAP3 SDF4 ATAD3C LOC107985729 CDK11B CCNL2 TMEM240 MXRA8 TAS1R3 PUSL1 MIR6727 LOC102724312 MIB2 UBE2J2 MIR200B MIR6726 MIR429 DVL1 VWA1 LINC01342 CPTP ATAD3A MIR6808 TNFRSF4 LOC148413 CPSF3L MIR200A B3GALT6 MRPL20 SSU72 TTLL10 SCNN1D MMP23B FNDC10 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ATAD3B VWA1 TMEM88B ATAD3A ANKRD65 LOC148413 ATAD3C LOC107985729 MRPL20 CCNL2 TMEM240 SSU72 LOC102724312 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | ATAD3B SLC35E2 TMEM88B MMP23A CFAP74 LOC105378591 ANKRD65 ATAD3C LOC107985729 CDK11B SLC35E2B CCNL2 TMEM240 CDK11A CALML6 LOC102724312 MIB2 LOC105378949 VWA1 PRKCZ ATAD3A LOC148413 TMEM52 GABRD MRPL20 LOC105378589 SSU72 GNB1 MMP23B NADK FNDC10 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |