Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK129493.1 | ||||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | SSU72 TMEM240 TMEM88B ANKRD65 VWA1 LOC102724312 ATAD3B ATAD3A LOC107985729 ATAD3C |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LOC105378948 TMEM240 ANKRD65 LOC148413 CDK11B ACAP3 SLC35E2B MRPL20 TTLL10-AS1 TAS1R3 MXRA8 ATAD3B LINC00115 UBE2J2 RNF223 SAMD11 MMP23B TNFRSF4 SLC35E2 FNDC10 LOC100288069 CCNL2 FAM132A PUSL1 LOC100288175 FAM87B SDF4 MIR6726 KLHL17 CPSF3L SCNN1D LOC102724312 DVL1 CDK11A PERM1 TTLL10 LOC107985729 MIB2 NADK MIR6727 NOC2L FAM41C AGRN LOC100287934 B3GALT6 AURKAIP1 LOC107985728 LOC100130417 ISG15 MMP23A LOC284600 LINC01128 PLEKHN1 MIR200A LINC01342 SSU72 TMEM88B MIR200B VWA1 TNFRSF18 HES4 CPTP ATAD3A C1orf159 MIR429 MIR6808 ATAD3C |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | LOC148413 CDK11B MRPL20 TTLL10-AS1 MXRA8 ATAD3B UBE2J2 SAMD11 MMP23B LOC105378589 DDX11L1 FNDC10 FAM138A MTND1P23 OR4F5 MIR1302-2 CCNL2 GABRD FAM132A MIR6723 LOC100133331 CFAP74 PUSL1 SDF4 MIR6726 DVL1 PERM1 TTLL10 NOC2L FAM41C AGRN LOC107984841 LOC100506504 B3GALT6 LOC105378949 LOC107985728 LOC105378592 ISG15 FAAP20 LOC284600 MIR200A MIR6859-2 LINC01342 SSU72 MTND2P28 LOC105378591 TMEM88B MIR200B HES4 CPTP C1orf159 MIR429 ATAD3C LOC105378948 TMEM240 ANKRD65 LOC100132287 ACAP3 SLC35E2B TMEM52 TAS1R3 PRKCZ LINC00115 RNF223 TNFRSF4 SLC35E2 LOC101928626 LOC100134822 MORN1 LOC100288069 SKI MIR6859-1 LOC100129534 LOC100288175 FAM87B CALML6 KLHL17 CPSF3L SCNN1D LOC102724312 CDK11A LOC102725121 LOC107985729 MIB2 NADK WASH7P MIR6727 GNB1 LOC100287934 AURKAIP1 OR4F29 LOC100130417 MMP23A LINC01128 PLEKHN1 OR4F16 VWA1 TNFRSF18 LOC729737 ATAD3A LOC105378947 MIR6808 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | SDF4 TMEM240 ANKRD65 LOC148413 MIR6726 CPSF3L SCNN1D CDK11B LOC102724312 ACAP3 DVL1 TTLL10 LOC107985729 MIB2 MIR6727 MRPL20 TTLL10-AS1 TAS1R3 MXRA8 ATAD3B UBE2J2 B3GALT6 AURKAIP1 MMP23B TNFRSF4 FNDC10 MIR200A LINC01342 SSU72 TMEM88B CCNL2 MIR200B VWA1 TNFRSF18 FAM132A CPTP ATAD3A C1orf159 MIR429 PUSL1 MIR6808 ATAD3C |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | TMEM240 ANKRD65 LOC148413 LOC102724312 LOC107985729 SSU72 MRPL20 TMEM88B CCNL2 VWA1 ATAD3B ATAD3A ATAD3C |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | CALML6 TMEM240 ANKRD65 LOC148413 CDK11B LOC102724312 SLC35E2B CDK11A LOC107985729 MIB2 NADK TMEM52 MRPL20 PRKCZ GNB1 ATAD3B LOC105378949 MMP23B LOC105378589 MMP23A SLC35E2 FNDC10 SSU72 LOC105378591 TMEM88B CCNL2 VWA1 GABRD ATAD3A CFAP74 ATAD3C |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |