Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK127149.1 | 1 | 636 | ||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | LOC102724312 SSU72 VWA1 TMEM240 LOC107985729 TMEM88B ATAD3C ATAD3A ATAD3B ANKRD65 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LINC00115 TMEM240 LOC284600 LOC100287934 FNDC10 HES4 NOC2L NADK MIR429 SSU72 TTLL10 C1orf159 MIR6727 B3GALT6 ATAD3B FAM132A TAS1R3 MIR200B DVL1 MIR6726 ACAP3 SAMD11 LOC100288175 ATAD3A MXRA8 LOC107985728 MIR6808 TNFRSF4 TTLL10-AS1 FAM87B SLC35E2B ATAD3C LINC01128 LOC100130417 PLEKHN1 MMP23B MIR200A MMP23A CPSF3L LOC107985729 PUSL1 CPTP LOC102724312 MIB2 SDF4 TMEM88B AURKAIP1 LOC100288069 ANKRD65 KLHL17 PERM1 LINC01342 CDK11B LOC105378948 RNF223 CCNL2 UBE2J2 FAM41C VWA1 ISG15 TNFRSF18 SLC35E2 AGRN LOC148413 CDK11A SCNN1D MRPL20 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | LOC102725121 LOC284600 LOC100287934 NADK LOC107984841 SSU72 MORN1 C1orf159 MIR6727 LOC100129534 B3GALT6 ATAD3B TAS1R3 LOC100132287 MIR6726 ACAP3 OR4F5 LOC100506504 LOC107985728 MIR6808 FAM87B SLC35E2B MIR6859-1 LOC101928626 LOC100130417 LOC105378589 MMP23B GNB1 GABRD MIR1302-2 MMP23A LOC105378947 LOC107985729 MTND2P28 PUSL1 CPTP LOC102724312 MIB2 ANKRD65 KLHL17 LOC100133331 OR4F29 CCNL2 MTND1P23 UBE2J2 TNFRSF18 FAAP20 AGRN CDK11A SCNN1D FAM138A LINC00115 TMEM240 FNDC10 HES4 DDX11L1 NOC2L MIR429 LOC100134822 TTLL10 FAM132A LOC105378591 MIR200B DVL1 LOC105378949 SAMD11 LOC100288175 ATAD3A TMEM52 MXRA8 WASH7P PRKCZ TNFRSF4 TTLL10-AS1 CFAP74 ATAD3C LINC01128 PLEKHN1 MIR200A CPSF3L SKI LOC105378592 MIR6859-2 SDF4 TMEM88B AURKAIP1 LOC100288069 CALML6 PERM1 LINC01342 CDK11B LOC105378948 RNF223 FAM41C OR4F16 VWA1 ISG15 LOC729737 SLC35E2 LOC148413 MIR6723 MRPL20 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | MIR200A CPSF3L TMEM240 LOC107985729 FNDC10 PUSL1 CPTP LOC102724312 MIR429 SSU72 TTLL10 C1orf159 MIR6727 MIB2 SDF4 TMEM88B B3GALT6 AURKAIP1 ATAD3B FAM132A ANKRD65 TAS1R3 MIR200B DVL1 MIR6726 ACAP3 LINC01342 CDK11B ATAD3A MXRA8 CCNL2 MIR6808 TNFRSF4 UBE2J2 TTLL10-AS1 VWA1 TNFRSF18 LOC148413 ATAD3C SCNN1D MRPL20 MMP23B |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | TMEM240 LOC107985729 ATAD3A CCNL2 LOC102724312 SSU72 VWA1 TMEM88B LOC148413 ATAD3C ATAD3B ANKRD65 MRPL20 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | GABRD MMP23A TMEM240 LOC107985729 FNDC10 NADK LOC102724312 SSU72 MIB2 TMEM88B ATAD3B ANKRD65 LOC105378591 CALML6 LOC105378949 CDK11B ATAD3A TMEM52 CCNL2 PRKCZ CFAP74 VWA1 SLC35E2 LOC148413 SLC35E2B ATAD3C CDK11A MRPL20 LOC105378589 MMP23B GNB1 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |