Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | LOC107985729 ATAD3B SSU72 TMEM88B ATAD3A ANKRD65 ATAD3C LOC102724312 TMEM240 VWA1 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | ATAD3B MIR6726 TMEM88B LINC00115 CPTP DVL1 MIB2 ANKRD65 RNF223 AURKAIP1 PUSL1 TMEM240 ACAP3 PERM1 SLC35E2 LINC01342 KLHL17 LOC100288069 HES4 MIR200A CPSF3L CDK11A UBE2J2 TNFRSF18 AGRN FAM41C LOC107985729 MMP23A MMP23B MIR6727 LINC01128 PLEKHN1 LOC107985728 LOC284600 LOC100130417 NADK CCNL2 TTLL10 SLC35E2B MIR6808 ATAD3A LOC100288175 ATAD3C FAM132A MRPL20 SAMD11 SCNN1D LOC105378948 B3GALT6 MXRA8 CDK11B LOC148413 TNFRSF4 NOC2L ISG15 MIR200B LOC102724312 FNDC10 VWA1 SDF4 SSU72 MIR429 C1orf159 TTLL10-AS1 LOC100287934 TAS1R3 FAM87B |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | MIR6726 MIR6859-2 TMEM88B LINC00115 CPTP OR4F29 DVL1 RNF223 PUSL1 LOC105378589 PERM1 KLHL17 HES4 CPSF3L CDK11A AGRN FAAP20 MMP23A LOC100133331 MMP23B LOC105378947 LINC01128 OR4F5 LOC100129534 LOC107985728 LOC284600 LOC100506504 LOC100132287 LOC100130417 LOC107984841 LOC105378591 CCNL2 TTLL10 MIR6808 ATAD3A MTND1P23 ATAD3C MIR6723 MRPL20 LOC102724312 LOC105378592 LOC102725121 TMEM52 MIR429 C1orf159 TTLL10-AS1 LOC100287934 TAS1R3 ATAD3B LOC105378949 MIB2 ANKRD65 AURKAIP1 TMEM240 ACAP3 SLC35E2 LINC01342 LOC100288069 MIR200A LOC729737 SKI UBE2J2 TNFRSF18 FAM138A GNB1 FAM41C LOC107985729 MIR6727 PLEKHN1 OR4F16 CFAP74 MIR1302-2 CALML6 PRKCZ MORN1 NADK SLC35E2B MIR6859-1 DDX11L1 LOC100288175 FAM132A LOC100134822 SAMD11 SCNN1D LOC105378948 B3GALT6 MXRA8 CDK11B LOC148413 TNFRSF4 NOC2L ISG15 LOC101928626 MIR200B FNDC10 VWA1 SDF4 SSU72 GABRD FAM87B MTND2P28 WASH7P |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | ATAD3B MIR6726 TMEM88B CPTP DVL1 MIB2 ANKRD65 AURKAIP1 PUSL1 TMEM240 ACAP3 CCNL2 TTLL10 MIR6808 LINC01342 ATAD3A MIR200A ATAD3C CPSF3L FAM132A MRPL20 SCNN1D B3GALT6 UBE2J2 MXRA8 CDK11B LOC148413 TNFRSF18 TNFRSF4 MIR200B LOC102724312 FNDC10 VWA1 LOC107985729 SDF4 SSU72 MMP23B MIR6727 MIR429 C1orf159 TTLL10-AS1 TAS1R3 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ATAD3B TMEM88B ANKRD65 LOC102724312 TMEM240 VWA1 LOC107985729 CCNL2 SSU72 ATAD3A ATAD3C MRPL20 LOC148413 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | ATAD3B TMEM88B LOC105378949 MIB2 NADK ANKRD65 LOC105378591 TMEM240 LOC105378589 CCNL2 SLC35E2 SLC35E2B ATAD3A ATAD3C MRPL20 CDK11A CDK11B LOC148413 LOC102724312 GNB1 FNDC10 VWA1 LOC107985729 MMP23A SSU72 MMP23B TMEM52 CFAP74 GABRD CALML6 PRKCZ |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |