Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK129493.1 | 1 | 590 | ||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | VWA1 TMEM240 LOC107985729 LOC102724312 ATAD3A SSU72 ATAD3C ANKRD65 TMEM88B ATAD3B |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | CDK11A TAS1R3 TNFRSF18 LINC01342 FNDC10 KLHL17 ISG15 CDK11B TMEM88B CPTP PUSL1 MXRA8 MIR200A SSU72 SLC35E2B SDF4 RNF223 C1orf159 B3GALT6 MIR6808 ACAP3 LOC100287934 TMEM240 LOC107985729 AURKAIP1 SCNN1D LOC100288175 NOC2L ATAD3C HES4 NADK LOC100130417 PLEKHN1 MIR6727 SAMD11 MIR429 ATAD3B VWA1 MIB2 UBE2J2 FAM41C ANKRD65 TNFRSF4 AGRN CPSF3L CCNL2 LOC107985728 LOC102724312 ATAD3A LINC01128 PERM1 MIR200B MMP23A LOC284600 TTLL10-AS1 MMP23B MRPL20 FAM87B MIR6726 LOC100288069 LOC105378948 FAM132A LOC148413 TTLL10 DVL1 LINC00115 SLC35E2 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | CDK11A LOC100134822 MORN1 FAM138A PUSL1 MXRA8 MIR6859-1 SSU72 MIR6723 SLC35E2B RNF223 C1orf159 B3GALT6 ACAP3 LOC107985729 DDX11L1 LOC100288175 NOC2L HES4 MTND1P23 NADK OR4F29 PRKCZ CALML6 SAMD11 MIR429 VWA1 OR4F5 LOC102725121 ANKRD65 TMEM52 LOC107984841 CPSF3L LOC107985728 ATAD3A LOC100133331 GABRD LINC01128 PERM1 MIR200B CFAP74 GNB1 MMP23B WASH7P LOC101928626 MIR6726 FAM132A DVL1 LOC729737 LINC00115 TAS1R3 TNFRSF18 LINC01342 FNDC10 KLHL17 ISG15 CDK11B TMEM88B CPTP LOC105378592 LOC100132287 MIR200A LOC105378949 LOC105378589 SDF4 MIR6808 LOC100287934 TMEM240 AURKAIP1 SCNN1D ATAD3C FAAP20 LOC100130417 SKI PLEKHN1 LOC100506504 MIR6727 MIR6859-2 ATAD3B MIB2 UBE2J2 FAM41C TNFRSF4 LOC105378591 AGRN CCNL2 OR4F16 LOC102724312 MMP23A LOC105378947 LOC100129534 LOC284600 TTLL10-AS1 MRPL20 FAM87B LOC100288069 LOC105378948 MTND2P28 MIR1302-2 LOC148413 TTLL10 SLC35E2 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | TAS1R3 TNFRSF18 VWA1 LINC01342 FNDC10 MIB2 UBE2J2 ANKRD65 CDK11B TMEM88B CPTP TNFRSF4 CPSF3L CCNL2 PUSL1 MXRA8 LOC102724312 ATAD3A MIR200A SSU72 MIR200B SDF4 C1orf159 B3GALT6 MIR6808 ACAP3 TMEM240 TTLL10-AS1 LOC107985729 MMP23B MRPL20 AURKAIP1 SCNN1D ATAD3C MIR6726 FAM132A LOC148413 TTLL10 DVL1 MIR6727 MIR429 ATAD3B |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | VWA1 TMEM240 LOC107985729 MRPL20 ATAD3C ANKRD65 TMEM88B CCNL2 LOC102724312 ATAD3A LOC148413 SSU72 ATAD3B |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | CDK11A VWA1 FNDC10 MIB2 ANKRD65 TMEM52 CDK11B TMEM88B LOC105378591 CCNL2 LOC102724312 ATAD3A GABRD SSU72 LOC105378949 LOC105378589 SLC35E2B MMP23A CFAP74 GNB1 TMEM240 LOC107985729 MMP23B MRPL20 ATAD3C NADK LOC148413 PRKCZ CALML6 SLC35E2 ATAD3B |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |