Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK127149.1 | 1 | 276 | ||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | VWA1 ANKRD65 ATAD3B SSU72 LOC102724312 ATAD3C TMEM88B LOC107985729 ATAD3A TMEM240 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | TMEM88B NADK ISG15 TNFRSF18 B3GALT6 DVL1 AGRN SDF4 LOC102724312 CDK11A ATAD3C KLHL17 AURKAIP1 SCNN1D MRPL20 MIB2 SSU72 PLEKHN1 LOC107985728 NOC2L MIR429 MXRA8 FAM132A MIR6727 MIR200B LOC100288175 FNDC10 MIR6808 LOC148413 TMEM240 PUSL1 ANKRD65 TTLL10-AS1 ACAP3 CDK11B LOC107985729 CPSF3L CCNL2 MMP23B C1orf159 VWA1 MIR200A LINC00115 SAMD11 CPTP TTLL10 LOC284600 FAM41C LINC01342 LOC100288069 LOC105378948 ATAD3B TAS1R3 LOC100130417 PERM1 RNF223 ATAD3A MIR6726 SLC35E2B MMP23A TNFRSF4 FAM87B LOC100287934 HES4 LINC01128 SLC35E2 UBE2J2 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | TMEM88B NADK ISG15 TNFRSF18 B3GALT6 AGRN CDK11A KLHL17 AURKAIP1 LOC729737 MIB2 LOC100133331 FAM138A SKI LOC107985728 NOC2L MIR429 MXRA8 GNB1 MIR6727 GABRD FNDC10 LOC105378947 MIR6808 LOC148413 PUSL1 ANKRD65 LOC100132287 CDK11B LOC107984841 OR4F5 CCNL2 C1orf159 CFAP74 MIR200A CPTP TTLL10 LOC284600 LOC105378948 ATAD3B LOC100130417 ATAD3A LOC102725121 LOC100134822 TNFRSF4 FAM87B OR4F29 LINC01128 UBE2J2 LOC101928626 LOC105378591 MTND1P23 DVL1 SDF4 LOC102724312 ATAD3C LOC105378592 MIR6723 SCNN1D MORN1 MIR6859-1 MRPL20 OR4F16 CALML6 SSU72 PLEKHN1 LOC100506504 FAM132A MIR200B LOC100288175 MTND2P28 TMEM240 PRKCZ TTLL10-AS1 ACAP3 LOC107985729 CPSF3L MMP23B LOC100129534 VWA1 LINC00115 SAMD11 FAM41C LINC01342 LOC100288069 MIR6859-2 TAS1R3 LOC105378949 PERM1 RNF223 MIR1302-2 TMEM52 WASH7P FAAP20 MIR6726 SLC35E2B MMP23A DDX11L1 LOC105378589 LOC100287934 HES4 SLC35E2 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | ANKRD65 TTLL10-AS1 ACAP3 TMEM88B CDK11B LOC107985729 CPSF3L CCNL2 MMP23B C1orf159 TNFRSF18 B3GALT6 VWA1 DVL1 SDF4 LOC102724312 ATAD3C MIR200A AURKAIP1 SCNN1D CPTP TTLL10 LINC01342 MRPL20 MIB2 ATAD3B TAS1R3 SSU72 ATAD3A MIR429 MXRA8 MIR6726 FAM132A MIR6727 MIR200B TNFRSF4 FNDC10 MIR6808 LOC148413 TMEM240 PUSL1 UBE2J2 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ANKRD65 ATAD3B SSU72 TMEM88B LOC107985729 ATAD3A CCNL2 VWA1 LOC102724312 ATAD3C LOC148413 TMEM240 MRPL20 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | ANKRD65 TMEM88B NADK CDK11B LOC107985729 LOC105378591 CCNL2 MMP23B CFAP74 VWA1 LOC102724312 CDK11A ATAD3C MRPL20 MIB2 ATAD3B CALML6 SSU72 LOC105378949 ATAD3A TMEM52 GNB1 SLC35E2B MMP23A GABRD FNDC10 LOC105378589 LOC148413 TMEM240 SLC35E2 PRKCZ |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |