Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | ATAD3C ATAD3A TMEM240 VWA1 LOC102724312 ANKRD65 ATAD3B SSU72 TMEM88B LOC107985729 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LOC105378948 LOC100287934 KLHL17 LINC01128 LOC107985729 MIR6727 NADK CDK11A LOC102724312 ACAP3 SLC35E2B ATAD3C MXRA8 PUSL1 VWA1 TTLL10-AS1 MIB2 RNF223 PLEKHN1 UBE2J2 DVL1 PERM1 FAM132A LOC100288175 LOC100130417 TMEM88B MIR6808 SLC35E2 CCNL2 ISG15 AGRN FAM41C MIR429 B3GALT6 ANKRD65 CPTP NOC2L TNFRSF18 MMP23A TAS1R3 CDK11B LOC107985728 MIR200A CPSF3L SDF4 ATAD3A LOC148413 MMP23B ATAD3B LOC284600 C1orf159 LINC00115 TTLL10 SAMD11 TNFRSF4 FNDC10 FAM87B SCNN1D LINC01342 LOC100288069 TMEM240 AURKAIP1 HES4 MRPL20 SSU72 MIR200B MIR6726 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | SKI LOC729737 LOC100134822 LOC100287934 KLHL17 LOC107984841 MORN1 CFAP74 OR4F29 CDK11A ACAP3 VWA1 MIB2 DDX11L1 RNF223 PLEKHN1 DVL1 FAM132A LOC100288175 LOC100130417 TMEM88B TMEM52 MIR6808 MIR6859-2 MTND2P28 ISG15 LOC105378947 FAM41C LOC101928626 CPTP NOC2L LOC100133331 LOC107985728 CPSF3L SDF4 ATAD3A LOC148413 LOC284600 LINC00115 SAMD11 FAM87B CALML6 LOC100288069 LOC105378591 HES4 SSU72 MIR200B GABRD FAAP20 LOC105378948 LINC01128 LOC107985729 MIR6727 MIR1302-2 NADK MIR6723 LOC102724312 LOC100129534 SLC35E2B FAM138A ATAD3C MXRA8 MIR6859-1 PUSL1 TTLL10-AS1 UBE2J2 PERM1 SLC35E2 CCNL2 AGRN LOC100506504 MIR429 B3GALT6 LOC105378589 ANKRD65 TNFRSF18 MMP23A TAS1R3 CDK11B LOC100132287 OR4F16 LOC105378949 MIR200A WASH7P OR4F5 LOC102725121 MMP23B ATAD3B C1orf159 TTLL10 TNFRSF4 PRKCZ FNDC10 GNB1 SCNN1D LOC105378592 LINC01342 TMEM240 MTND1P23 AURKAIP1 MRPL20 MIR6726 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | CCNL2 MIR429 LOC107985729 MIR6727 B3GALT6 LOC102724312 ANKRD65 CPTP TNFRSF18 ACAP3 TAS1R3 CDK11B MIR200A CPSF3L ATAD3C MXRA8 SDF4 ATAD3A LOC148413 PUSL1 VWA1 MMP23B ATAD3B C1orf159 TTLL10-AS1 MIB2 TTLL10 TNFRSF4 FNDC10 SCNN1D UBE2J2 LINC01342 DVL1 TMEM240 AURKAIP1 FAM132A MRPL20 SSU72 MIR200B MIR6726 TMEM88B MIR6808 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ATAD3C ATAD3A LOC148413 CCNL2 VWA1 ATAD3B LOC107985729 TMEM240 LOC102724312 ANKRD65 MRPL20 SSU72 TMEM88B |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | SLC35E2 CCNL2 LOC107985729 CFAP74 LOC105378589 NADK CDK11A LOC102724312 ANKRD65 SLC35E2B MMP23A CDK11B LOC105378949 ATAD3C ATAD3A LOC148413 VWA1 MMP23B ATAD3B MIB2 PRKCZ FNDC10 GNB1 CALML6 TMEM240 LOC105378591 MRPL20 SSU72 TMEM88B TMEM52 GABRD |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |