Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 2 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK297505.1 | ||||
AK310067.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | ATAD3B ATAD3A SSU72 LOC107985729 LOC102724312 ANKRD65 TMEM88B ATAD3C VWA1 TMEM240 |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LOC100288069 LINC01128 NOC2L TAS1R3 CDK11A MIR6726 CCNL2 KLHL17 ATAD3B FAM87B LOC100287934 SDF4 LOC100288175 TTLL10 MIR6808 MIR6727 LINC01342 RNF223 CDK11B CPTP MMP23B AGRN AURKAIP1 MXRA8 ISG15 PUSL1 FAM132A NADK TTLL10-AS1 MIB2 LOC107985729 LINC00115 SCNN1D UBE2J2 DVL1 TMEM88B SAMD11 TMEM240 SSU72 SLC35E2B CPSF3L FAM41C FNDC10 LOC107985728 MRPL20 VWA1 LOC102724312 SLC35E2 MIR429 TNFRSF18 HES4 PLEKHN1 C1orf159 ATAD3A MMP23A LOC105378948 LOC100130417 PERM1 MIR200B ATAD3C LOC148413 LOC284600 MIR200A ANKRD65 ACAP3 TNFRSF4 B3GALT6 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | LOC100288069 NOC2L PRKCZ LOC102725121 TAS1R3 CCNL2 ATAD3B LOC100287934 SDF4 LOC105378589 LOC100133331 TTLL10 CDK11B MMP23B AGRN MXRA8 ISG15 PUSL1 FAM132A DDX11L1 MORN1 CALML6 LINC00115 SCNN1D TMEM88B SAMD11 OR4F5 FAAP20 SSU72 CPSF3L FAM41C LOC107985728 MRPL20 MIR6723 CFAP74 SLC35E2 HES4 MIR6859-1 ATAD3A TMEM52 LOC105378948 LOC100130417 PERM1 MIR200B ATAD3C LOC101928626 LOC284600 MIR200A MIR6859-2 WASH7P ANKRD65 ACAP3 TNFRSF4 LOC100132287 LINC01128 GNB1 CDK11A MIR6726 KLHL17 FAM87B FAM138A LOC100288175 LOC107984841 MIR6808 MIR6727 LINC01342 RNF223 CPTP LOC100134822 AURKAIP1 NADK TTLL10-AS1 MIB2 LOC107985729 GABRD UBE2J2 LOC105378949 DVL1 MIR1302-2 TMEM240 SLC35E2B OR4F29 FNDC10 LOC100506504 LOC105378591 MTND2P28 OR4F16 LOC100129534 VWA1 LOC102724312 MTND1P23 MIR429 LOC105378947 TNFRSF18 PLEKHN1 LOC105378592 C1orf159 MMP23A LOC148413 LOC729737 B3GALT6 SKI |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | SSU72 CPSF3L TAS1R3 FNDC10 MRPL20 MIR6726 CCNL2 VWA1 ATAD3B LOC102724312 SDF4 MIR429 TNFRSF18 TTLL10 C1orf159 MIR6808 ATAD3A MIR6727 LINC01342 CDK11B CPTP MMP23B MIR200B AURKAIP1 MXRA8 ATAD3C LOC148413 PUSL1 FAM132A TTLL10-AS1 MIB2 LOC107985729 MIR200A SCNN1D UBE2J2 DVL1 ANKRD65 TMEM88B ACAP3 TNFRSF4 B3GALT6 TMEM240 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ATAD3A SSU72 MRPL20 ATAD3C CCNL2 LOC148413 VWA1 ATAD3B LOC107985729 LOC102724312 ANKRD65 TMEM88B TMEM240 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | SSU72 SLC35E2B PRKCZ GNB1 FNDC10 CDK11A MRPL20 LOC105378591 CCNL2 VWA1 ATAD3B CFAP74 LOC102724312 SLC35E2 LOC105378589 ATAD3A TMEM52 MMP23A CDK11B MMP23B ATAD3C LOC148413 NADK MIB2 LOC107985729 CALML6 GABRD LOC105378949 ANKRD65 TMEM88B TMEM240 |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |