Assay Details
Target Gene Details
Entrez Gene ID: | 29101 |
Gene Name: | SSU72 homolog, RNA polymerase II CTD phosphatase |
Gene Aliases: |
HSPC182, PNAS-120 |
Location: |
Chr.1:1541673-1574882 on Build GRCh38 |
Assay Gene Location: | Within Intron 4 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
SSU72 | NM_014188.2 | NP_054907.1 | ||
AF161530.1 | AAF29145.1 | |||
AF277178.1 | AAK07538.1 | |||
AJ276409.1 | CAC81713.1 | |||
AK001809.1 | BAA91921.1 | |||
AK127149.1 | ||||
BC008070.2 | AAH08070.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv545000 | Chr.1:1421170 - 1573654 on Build GRCh38 | Loss | ATAD3C SSU72 ANKRD65 ATAD3B VWA1 LOC102724312 TMEM88B LOC107985729 TMEM240 ATAD3A |
nsv10161 | Chr.1:776731 - 1777210 on Build GRCh38 | Gain+Loss | LOC100288069 SSU72 SLC35E2B CDK11B TAS1R3 MIR200A C1orf159 RNF223 TTLL10-AS1 SDF4 LOC284600 LINC00115 CPSF3L PLEKHN1 MRPL20 LOC107985728 PERM1 ISG15 AURKAIP1 TNFRSF18 TTLL10 LOC100130417 ATAD3C LOC100288175 MMP23B LOC148413 MIR200B LINC01342 LOC105378948 TMEM240 MIR6727 NOC2L NADK LINC01128 MIR429 TMEM88B MIR6808 SCNN1D ATAD3A DVL1 MIR6726 MXRA8 FAM87B ATAD3B FAM41C TNFRSF4 CCNL2 AGRN B3GALT6 HES4 ANKRD65 VWA1 MMP23A LOC102724312 CDK11A PUSL1 CPTP LOC100287934 KLHL17 MIB2 FNDC10 ACAP3 FAM132A SLC35E2 LOC107985729 SAMD11 UBE2J2 |
nsv482937 | Chr.1:10001 - 2368561 on Build GRCh38 | Loss | MTND1P23 MIR200A GABRD TTLL10-AS1 SDF4 LOC284600 FAAP20 LINC00115 CPSF3L LOC729737 ISG15 LOC100133331 LOC100130417 LOC100288175 MMP23B LOC148413 LOC105378949 MTND2P28 LINC01342 OR4F16 NADK SKI LINC01128 LOC105378589 SCNN1D DVL1 LOC100506504 FAM138A MXRA8 FAM87B TNFRSF4 LOC105378592 OR4F29 LOC100129534 AGRN MIR1302-2 HES4 VWA1 MMP23A CDK11A PUSL1 MORN1 GNB1 LOC100287934 MIB2 FNDC10 FAM132A MIR6859-2 LOC107985729 SAMD11 LOC105378947 DDX11L1 UBE2J2 LOC102725121 LOC100288069 SSU72 CALML6 SLC35E2B CDK11B TAS1R3 C1orf159 RNF223 LOC105378591 CFAP74 PLEKHN1 MRPL20 LOC107985728 PERM1 AURKAIP1 TNFRSF18 TTLL10 ATAD3C MIR200B LOC105378948 LOC100132287 TMEM240 MIR6727 NOC2L TMEM52 MIR429 LOC101928626 TMEM88B MIR6808 ATAD3A MIR6726 LOC107984841 ATAD3B FAM41C OR4F5 CCNL2 B3GALT6 PRKCZ ANKRD65 WASH7P LOC102724312 MIR6859-1 CPTP KLHL17 MIR6723 ACAP3 SLC35E2 LOC100134822 |
nsv950452 | Chr.1:1106921 - 1637538 on Build GRCh38 | Deletion | MIR6726 MXRA8 SSU72 ATAD3B CDK11B TAS1R3 MIR200A TNFRSF4 C1orf159 TTLL10-AS1 SDF4 CCNL2 B3GALT6 ANKRD65 VWA1 CPSF3L LOC102724312 MRPL20 PUSL1 AURKAIP1 TNFRSF18 CPTP TTLL10 ATAD3C MMP23B LOC148413 MIR200B LINC01342 TMEM240 MIR6727 MIB2 FNDC10 ACAP3 FAM132A MIR429 TMEM88B LOC107985729 MIR6808 SCNN1D ATAD3A UBE2J2 DVL1 |
nsv1011818 | Chr.1:1394332 - 1575421 on Build GRCh38 | Gain | ATAD3C SSU72 ATAD3B LOC148413 TMEM240 CCNL2 ANKRD65 VWA1 LOC102724312 TMEM88B LOC107985729 ATAD3A MRPL20 |
esv2758913 | Chr.1:1389149 - 2092899 on Build GRCh38 | Gain+Loss | SSU72 ATAD3B CALML6 SLC35E2B CDK11B GABRD CCNL2 PRKCZ ANKRD65 LOC105378591 VWA1 MMP23A LOC102724312 CFAP74 CDK11A MRPL20 ATAD3C MMP23B GNB1 LOC148413 LOC105378949 TMEM240 MIB2 FNDC10 SLC35E2 TMEM52 NADK TMEM88B LOC107985729 LOC105378589 ATAD3A |
More Information
Set Membership: |
Intragenic Intronic Non-exonic DGV Variation |