Assay Details
Target Gene Details
Entrez Gene ID: | 79058 |
Gene Name: | ASPSCR1, UBX domain containing tether for SLC2A4 |
Gene Aliases: |
ASPCR1, ASPL, ASPS, RCC17, TUG, UBXD9, UBXN9 |
Location: |
Chr.17:81977550-82018929 on Build GRCh38 |
Assay Gene Location: | Overlaps - Exon 19 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
ASPSCR1 | XM_011523601.2 | XP_011521903.1 | ||
XM_011523602.2 | XP_011521904.1 | |||
XM_017025036.1 | XP_016880525.1 | |||
XM_017025037.1 | XP_016880526.1 | |||
XM_017025038.1 | XP_016880527.1 | |||
XM_017025039.1 | XP_016880528.1 | |||
XM_017025040.1 | XP_016880529.1 | |||
XM_017025041.1 | XP_016880530.1 |
Target Gene Details
Entrez Gene ID: | 201254 |
Gene Name: | stimulated by retinoic acid 13 |
Gene Aliases: |
CENP-X, CENPX, D9, FAAP10, MHF2 |
Location: |
Chr.17:82018703-82022930 on Build GRCh38 |
Assay Gene Location: | Within Exon 3 |
Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
---|---|---|---|---|
STRA13 | NM_001271006.1 | 5 | 598 | NP_001257935.1 |
NM_001271007.1 | 4 | 529 | NP_001257936.1 | |
NM_144998.3 | 4 | 544 | NP_659435.2 | |
XM_005256339.2 | 5 | 750 | XP_005256396.1 | |
XM_017024326.1 | 3 | 951 | XP_016879815.1 | |
XM_017024327.1 | 4 | 823 | XP_016879816.1 | |
XM_017024328.1 | 4 | 692 | XP_016879817.1 | |
XM_017024329.1 | 3 | 638 | XP_016879818.1 | |
BC009571.1 | 4 | 513 | AAH09571.1 | |
BC011610.1 | 4 | 480 | AAH11610.1 | |
BI837753.1 | 4 | 512 | ||
BQ648002.1 | 1 | 233 | ||
U95006.1 | 4 | 499 | AAB53638.1 | |
U95007.1 | 4 | 484 | AAB53639.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
Target Variation |
Location | CNV Subtype |
Genes |
---|---|---|---|
nsv952392 | Chr.17:81885825 - 82065724 on Build GRCh38 | Deletion | ALYREF GPS1 ASPSCR1 SIRT7 ANAPC11 MAFG-AS1 STRA13 NOTUM DUS1L RAC3 MAFG NPB LRRC45 PYCR1 PCYT2 DCXR MYADML2 RFNG |
nsv576183 | Chr.17:81991355 - 82086850 on Build GRCh38 | Loss | GPS1 LRRC45 ASPSCR1 DCXR STRA13 DUS1L FASN RFNG RAC3 |
nsv428351 | Chr.17:81152631 - 83064073 on Build GRCh38 | Gain | LOC105376790 ALYREF HGS MRPL12 FOXK2 FAAP100 FN3K NPLOC4 MAFG-AS1 STRA13 LOC105376791 MAFG C17orf62 B3GNTL1 LRRC45 TEPSIN PDE6G WDR45B MYADML2 ZNF750 FN3KRP AATK-AS1 UTS2R ASPSCR1 MIR4740 SIRT7 ARHGDIA TBCD MIR4525 SECTM1 BAHCC1 NARF RAC3 TSPAN10 NPB MCRIP1 PYCR1 CD7 RAB40B ACTG1 RFNG C17orf89 AATK LOC100130370 ANAPC11 LOC101929552 PPP1R27 SLC25A10 SLC16A3 CCDC57 MIR3186 TEX19 FSCN2 OXLD1 LOC105371944 CEP131 MIR6787 MIR6786 GPS1 CCDC137 P4HB TMEM105 ARL16 SNORD134 CSNK1D NOTUM GCGR DUS1L FASN SLC38A10 HEXDC LOC105371925 OGFOD3 PCYT2 LINC00482 DCXR LOC101929511 |
nsv470620 | Chr.17:81516973 - 82064485 on Build GRCh38 | Loss | ALYREF HGS MRPL12 FAAP100 NPLOC4 ANAPC11 MAFG-AS1 PPP1R27 STRA13 SLC25A10 FSCN2 MAFG OXLD1 LRRC45 PDE6G MYADML2 MIR6786 GPS1 CCDC137 P4HB ASPSCR1 SIRT7 ARL16 ARHGDIA NOTUM GCGR DUS1L RAC3 TSPAN10 NPB MCRIP1 PYCR1 PCYT2 DCXR RFNG |
dgv5800n54 | Chr.17:82013189 - 82035336 on Build GRCh38 | Loss | LRRC45 ASPSCR1 STRA13 RAC3 |
esv21913 | Chr.17:81828123 - 83103548 on Build GRCh38 | Gain+Loss | LOC105376790 ALYREF FOXK2 FN3K MAFG-AS1 STRA13 LOC105376791 MAFG C17orf62 B3GNTL1 LRRC45 WDR45B MYADML2 ZNF750 FN3KRP UTS2R ASPSCR1 SIRT7 ARHGDIA TBCD MIR4525 SECTM1 NARF METRNL RAC3 NPB MCRIP1 PYCR1 CD7 RAB40B RFNG ANAPC11 LOC101929552 PPP1R27 SLC16A3 CCDC57 TEX19 LOC105371944 MIR6787 GPS1 P4HB SNORD134 CSNK1D NOTUM DUS1L FASN HEXDC OGFOD3 PCYT2 DCXR LOC101929511 |
More Information
Set Membership: |
Intragenic Exonic Non-exonic DGV Variation |