Genomic Map
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Target Gene Details
Entrez Gene ID: | 50485 |
Gene Name: | SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a like 1 |
Gene Aliases: |
HARP, HHARP |
Location: |
Chr.2:216412414-216483053 on Build GRCh38 |
Assay Gene Location: | Within Exon 4 |
| Gene Symbol | Transcript Accession | Exon Location | Assay Transcript Location | Protein ID |
|---|---|---|---|---|
| SMARCAL1 | NM_001127207.1 | 3 | 811 | NP_001120679.1 |
| NM_014140.3 | 3 | 997 | NP_054859.2 | |
| XM_005246631.2 | 3 | 935 | XP_005246688.1 | |
| XM_005246632.1 | 3 | 987 | XP_005246689.1 | |
| XM_017004228.1 | 3 | 796 | XP_016859717.1 | |
| AF082179.1 | 2 | 767 | AAF24984.1 | |
| AF432223.1 | 3 | 807 | AAL73034.1 | |
| AK023780.1 | 3 | 938 | ||
| AL122076.1 | 1 | 231 | CAB59251.1 | |
| BC016482.1 | 2 | 758 | AAH16482.1 | |
| BC043341.1 | 3 | 784 | AAH43341.1 |
Target Copy Number Variation Details
DGV Version: |
Release date: 2016-05-15, GRCh GRCh38 |
| Target Variation |
Location | CNV Subtype |
Genes |
|---|---|---|---|
| nsv524480 | Chr.2:216410728 - 216424792 on Build GRCh38 | Loss |
 SMARCAL1
|
| nsv834537 | Chr.2:216266174 - 216448640 on Build GRCh38 | Loss |
MARCH4
SMARCAL1
|
| nsv1005697 | Chr.2:216231371 - 216429101 on Build GRCh38 | Loss |
MARCH4
SMARCAL1
|
| nsv1001603 | Chr.2:216327457 - 216442936 on Build GRCh38 | Gain |
MARCH4
SMARCAL1
|
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Set Membership: |
Intragenic
Exonic
DGV Variation
|
Panther Classification:
Gene Ontology Categories:
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